View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_1 (Length: 704)
Name: NF8701_low_1
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 80 - 463
Target Start/End: Complemental strand, 38527123 - 38526740
Alignment:
| Q |
80 |
ttccttcaaacaatacctcttcatacacaagagcttctaaccacttgcttaaagcatttggattttttactactcaaaccaagtatatgatggtgaaatt |
179 |
Q |
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| T |
38527123 |
ttccttcaaacaatacctcttcatacacaagagcttctaaccacttgcttaaaccgtttggattttttactactcaaaccaagtatatgatggtgaaatt |
38527024 |
T |
|
| Q |
180 |
ttgaaacacgttaaacatttaaattgaattgtttccttcaaacgatatttcttcatatagaagagcttctaaccattagattaacgtgcctgaaaatttt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
38527023 |
ttgaaacacgttaaacatttaaattgaattgtttccttcaaacgatatttcttcatatagaagagcttctaaccactagtttaacgtgcctgaaaatttt |
38526924 |
T |
|
| Q |
280 |
actactcaaaccaactacatgttggtgaaattttaaaattcgttaaacactcaagctgaattgtttcctacaaatgatatctcttcatagataaaaactt |
379 |
Q |
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||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
38526923 |
actactcaaaccaactatatgttggtgaaattttgaaactcgttaaacactcaagctgaattgttttctacaaacgatatcttttcatagataaaaactt |
38526824 |
T |
|
| Q |
380 |
ttaaccacttgtttaaatcgtttgaactttttattactcaacccaactacatgttgtgaaatcaaaatgttctatcattgtaag |
463 |
Q |
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| T |
38526823 |
ttaaccacttgcctaaatcgtttgaattttttattactcaacccaactacatgttgtgaaatcaatatattctatcattataag |
38526740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 509 - 687
Target Start/End: Complemental strand, 38526737 - 38526559
Alignment:
| Q |
509 |
tattgaatagccttatgctttgtaaatattattagtannnnnnnnnnngtaaatgttgtattttcttctttcttggtgaccaaatgggagaagcttaaaa |
608 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526737 |
tattgaatagccttatgctttgtaaatattattagcattttttttttagtaaatgttgtattttcttctttcttggtgaccaaatgggagaagcttaaaa |
38526638 |
T |
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| Q |
609 |
taaaaggactaaagagaaataaggtagagagttactccatttaattaagtagaaaacaaaggttgtcttagcaaaatag |
687 |
Q |
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| T |
38526637 |
taaaaggactaaagagaaataaggtagagagttactccaattaattaagtagaaaacaaaggttgtcttagcaaaatag |
38526559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 38527005 - 38526835
Alignment:
| Q |
66 |
ttaagttgaattgtttccttcaaacaatacctcttcatacacaagagcttctaaccacttgcttaaagcatttggattttttactactcaaaccaagtat |
165 |
Q |
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|||| |||||||||||||||||||| ||| |||||||| | ||||||||||||||||| | |||| | || | |||||||||||||||||| ||| |
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| T |
38527005 |
ttaaattgaattgtttccttcaaacgatatttcttcatatagaagagcttctaaccactagtttaacgtgcctgaaaattttactactcaaaccaactat |
38526906 |
T |
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| Q |
166 |
atgatggtgaaattttgaaacacgttaaacatttaaattgaattgtttccttcaaacgatatttcttcata |
236 |
Q |
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||| ||||||||||||||||| ||||||||| | || |||||||||| || |||||||||| | |||||| |
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| T |
38526905 |
atgttggtgaaattttgaaactcgttaaacactcaagctgaattgttttctacaaacgatatcttttcata |
38526835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 38526891 - 38526778
Alignment:
| Q |
48 |
ttgaaactcatcaagcacttaagttgaattgtttccttcaaacaatacctcttcatacacaagagcttctaaccacttgcttaaagcatttggatttttt |
147 |
Q |
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||||||||| | || |||| ||| |||||||||| || ||||| ||| || |||||| | || | ||| ||||||||||| |||| | |||| ||||||| |
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| T |
38526891 |
ttgaaactcgttaaacactcaagctgaattgttttctacaaacgatatcttttcatagataaaaacttttaaccacttgcctaaatcgtttgaatttttt |
38526792 |
T |
|
| Q |
148 |
actactcaaaccaa |
161 |
Q |
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| T |
38526791 |
attactcaacccaa |
38526778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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