View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_10 (Length: 353)
Name: NF8701_low_10
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 154 - 337
Target Start/End: Complemental strand, 41592604 - 41592421
Alignment:
| Q |
154 |
gattgaactattaaagaagtgaccaaactcaatactttgattgcattgaacagcaactaaaccataatgtaaagcataaacatcacaatcaaattgtgca |
253 |
Q |
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| T |
41592604 |
gattgaactattaaagaagtgaccaaactcaatactttgactgcattgaacagcaactaaaccataatgtaaagcataaacatcacaatcaaattgtgca |
41592505 |
T |
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| Q |
254 |
gggtaatcagattgcattttaaaaatgcagaacaaaagctttcggtgtttaaattatcttgtaaagtgactgcagaagtaaaac |
337 |
Q |
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| T |
41592504 |
gggtaatcagattgcattttaaaaatgcagaacaaaagctttcggtgtttaaattatcttgtaaagtgactgcagaagtaaaac |
41592421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 41592746 - 41592672
Alignment:
| Q |
12 |
agagataaaaaagagctttacaactcaaatgagagtataattcatataaaattatattgatcaaatgatttgtgc |
86 |
Q |
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| T |
41592746 |
agagataaaaaagagctttacaactcaaatgagagtataattcatatgaaattatattgatcaaatgatttgtgc |
41592672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 31072187 - 31072243
Alignment:
| Q |
20 |
aaaagagctttacaactcaaatgagagtataattcatataaaattatattgatcaaa |
76 |
Q |
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| T |
31072187 |
aaaagagctttatagctcaaatgaaagttaaattcatagaaacttatattgatcaaa |
31072243 |
T |
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