View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_12 (Length: 345)
Name: NF8701_low_12
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 2461929 - 2462249
Alignment:
| Q |
9 |
gagtgcccggaattaggacctgttggtggcttattggcatcacaagattttcggacaacagcatctgttttggtgatgcaacagtatcccaatggggtgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461929 |
gagtgcccggaattaggacctgttggtggcttattggcatcacaagattttcggacaacagcatctgttttggtgatgcaacagtatcccaatggggtgc |
2462028 |
T |
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| Q |
109 |
caataaattttgtcccagaaatggaggaacattgacgtgatggagacacagaatcttcttaactgctctgttattacattgtcgcgaatcacgcatgggg |
208 |
Q |
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| T |
2462029 |
caataaattttgtcccagaaatggaggaacattgacgtgatggagacacagaatcttcttaactgctctgttattacattgtcgcgaatcacgcatgggg |
2462128 |
T |
|
| Q |
209 |
tggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtg |
308 |
Q |
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| T |
2462129 |
tggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtg |
2462228 |
T |
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| Q |
309 |
tacaacaaaatttgttgttat |
329 |
Q |
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||||||||||||||||||||| |
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| T |
2462229 |
tacaacaaaatttgttgttat |
2462249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 2450919 - 2451227
Alignment:
| Q |
9 |
gagtgcccggaattaggacctgttggtggcttattggcatcacaagattttcggacaacagcatctgttttggtgatgcaacagtatcccaatggggtgc |
108 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2450919 |
gagtgcccagaattaggacctgttggtggcttgttggcatcacaagatttccgcacaacagcatctgttttggtgatgcaacagtatcacaatggggtgc |
2451018 |
T |
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| Q |
109 |
caataaattttgtcccagaaatggaggaacattgacgtgatggagacacagaatcttcttaactgctctgttattacattgtcgcgaatcacgcatgggg |
208 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
2451019 |
caataaactttgtcccagaaatggaggaacattcacgtgatggagacacggaatcttcttaactgctctgtttttacattgtcccgaatcgcgcatgggg |
2451118 |
T |
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| Q |
209 |
tggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtg |
308 |
Q |
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||||||||||||||| |||| | |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2451119 |
tggatggtgctacataagggtttggaataagtgttctaacctgcattgtacccaattcgacataaataagaaagtttatttgacttaaatttgttaggtt |
2451218 |
T |
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| Q |
309 |
tacaacaaa |
317 |
Q |
| |
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||||||||| |
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| T |
2451219 |
tacaacaaa |
2451227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 2446151 - 2446284
Alignment:
| Q |
8 |
ggagtgcccggaattaggacctgttggtggcttattggcatcacaagattttcggacaacagcatctgttttggtgatgcaacagtatcccaatggggtg |
107 |
Q |
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||||||||||||| ||||||||||||||||||| ||| ||| ||||||| | ||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
2446151 |
ggagtgcccggaactaggacctgttggtggcttgttgatatcccaagattgccccacaacagcatcggttttggtgatgcaacagtatcataatggggtg |
2446250 |
T |
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| Q |
108 |
ccaataaattttgtcccagaaatggaggaacatt |
141 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
2446251 |
ccaatgaattttgtcccagaaatggaggaacatt |
2446284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 2446356 - 2446447
Alignment:
| Q |
226 |
gggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtgtacaacaaa |
317 |
Q |
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|||||||||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||| |||| ||| |||||| ||||||| |
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| T |
2446356 |
gggatgggaataagatttctaatctgcattggacccgattctacataaataagaaagtttatttgactaaaatttgttaggtgtccaacaaa |
2446447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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