View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_15 (Length: 311)
Name: NF8701_low_15
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 23678993 - 23678726
Alignment:
| Q |
24 |
caaggaacacaagcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaaga |
123 |
Q |
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| T |
23678993 |
caaggaacacaagcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaaga |
23678894 |
T |
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| Q |
124 |
actaggtccatcactaggatgaatatagtaaggagaat------cagagttagaaggtgcagaatttccacgcgccatgaaaacagagtatagaaacaag |
217 |
Q |
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| T |
23678893 |
actaggtccatcactaggatgaatatagtaaggagaatcagaatcagagttagaaggtgcataatttccacgcgccatgaaaacagagtatagaaacaag |
23678794 |
T |
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| Q |
218 |
agaagaagagaaaaattgcaaactaattgaacgaaaaggatatcgcaattcggagcaagaacacgaaa |
285 |
Q |
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| T |
23678793 |
agaagaaaagaaaaattgcaaacgaattgaacgaaaaggatatcgcaattcggagcaagaacacgaaa |
23678726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 37740750 - 37741017
Alignment:
| Q |
24 |
caaggaacacaagcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaaga |
123 |
Q |
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| T |
37740750 |
caaggaacacaagcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaaga |
37740849 |
T |
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| Q |
124 |
actaggtccatcactaggatgaatatagtaagg------agaatcagagttagaaggtgcagaatttccacgcgccatgaaaacagagtatagaaacaag |
217 |
Q |
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| T |
37740850 |
actaggtccatcactaggatgaatatagtaaggagaatcagaatcagagttagaaggtgcagaatttccacgcgccatgaaaacagagtataggaacaag |
37740949 |
T |
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| Q |
218 |
agaagaagagaaaaattgcaaactaattgaacgaaaaggatatcgcaattcggagcaagaacacgaaa |
285 |
Q |
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| T |
37740950 |
agaagaggaagaaaattgcaaacgaattgaacgaaaaagatatcgcaattcggagcaagaacaagaaa |
37741017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 3001504 - 3001258
Alignment:
| Q |
39 |
tgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaagaactaggtccatcact |
138 |
Q |
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| T |
3001504 |
tgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaagaactaggtccatcact |
3001405 |
T |
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| Q |
139 |
aggatgaatatagtaaggagaatcagagttagaaggtgcagaatttccacgcgccatgaaaacagagtatagaaacaagagaagaagagaaaaattgcaa |
238 |
Q |
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| T |
3001404 |
aggatgaatatagtaaggagaatcagagttagaaggtgcagaatttccacgcaccatgaaaacagagtataggaacaagagaagagaaagaaaattgcaa |
3001305 |
T |
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| Q |
239 |
actaattgaacgaaaaggatatcgcaattcggagcaagaacacgaaa |
285 |
Q |
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| T |
3001304 |
acgaattgaacgaaaaggatatcgcaattcggagcaagaacaagaaa |
3001258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 18474496 - 18474367
Alignment:
| Q |
36 |
gcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaagaactaggtccatc |
135 |
Q |
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||||||||||| |||| || || |||||||| ||||| ||||| |||||||| || || |||||||| || ||||||||||||||| | ||||| | ||| |
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| T |
18474496 |
gcttgttcttcacgcctaaggcacgttgcatggaacggtgccaagcaagatagttggatccattgagctttggagtgataatcaaaaagctaggactatc |
18474397 |
T |
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| Q |
136 |
actaggatgaatatagtaaggagaatcaga |
165 |
Q |
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| T |
18474396 |
actcggatccacatagtatggagaatcaga |
18474367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 23905320 - 23905502
Alignment:
| Q |
32 |
acaagcttgttcttcgcgcccaaagctcgttgcatagaacgatgccatgcaagataattcgaaccattgagtttgggagtgataatcaaagaactaggtc |
131 |
Q |
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| T |
23905320 |
acaagcttgttcatcgcgcccaaagctcgttgcatggaacgatgccatgcaagataattcgagccattgagtttgggagtgataaccaaagaactaggtc |
23905419 |
T |
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| Q |
132 |
catcactaggatgaatatagtaagga------gaatcagagttagaaggtgcagaatttccacgcgccatgaaaacagagtat |
208 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
23905420 |
catcactaggatgaatattgtaaggagaatctgaatcagagttagaaggtgcagaaattccacgagccatgaaaacagagtat |
23905502 |
T |
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