View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8701_low_18 (Length: 297)
Name: NF8701_low_18
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 52036144 - 52036433
Alignment:
| Q |
1 |
cacaaattcactatacacaggttcagattaatacaaccatcgatgcatcaaacatgaataatttctacaaccatatgattattttaactacnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52036144 |
cacaaattcactatacacaggttcagattaatacaaccattgatgcatcaaacatgaataatttctacaaccatatgattattttaactacaaaaaaaaa |
52036243 |
T |
|
| Q |
101 |
-gtctcaagatatagcaa----------ccgtaatttaaaaccatgttatctccgaaaacacttctataaaaattatatcattgcttgagtgttttagct |
189 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52036244 |
agtctcaagatatagcaaaaggtatgaaccgtaattgaaaaccatgttatctccgaaaacacttctataaaccttatatcattgcttgagtgttttagct |
52036343 |
T |
|
| Q |
190 |
gaaggtgcagcatatctagcagagaaaccgcggcctaaagcttcttcgtcgtcctcctcccaactaccatcatcaaaattttgagcatag |
279 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52036344 |
gaagatgcagcatatctagcagagaaaccgcggcctaaagcttcttcgtcgtcctcctcccaactaccatcatcaaaattttgagcatag |
52036433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University