View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_19 (Length: 283)
Name: NF8701_low_19
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30946462 - 30946726
Alignment:
| Q |
1 |
taaggtcaatcatgtcaaccagttaggagtttagtgcctatgtcatgacaaaaccaaaatttgctcagtttacatttacaataccaagaatgaaatacaa |
100 |
Q |
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| T |
30946462 |
taaggtcaatcatgtcaaccagttaggagtttagtgcctatgtcatgacaaaaccaaaatttgctcagtttacatttacaataccaagaatgaaatacaa |
30946561 |
T |
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| Q |
101 |
aatagaattaaaggttacaagcatatacggtcgacaatcgactgtatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattatat |
200 |
Q |
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| T |
30946562 |
aatagaattaaaggttacaagcatatacggtcgacaatcaactgtatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattatat |
30946661 |
T |
|
| Q |
201 |
gattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctacatt |
265 |
Q |
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| T |
30946662 |
aattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctacatt |
30946726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 30956699 - 30956940
Alignment:
| Q |
2 |
aaggtcaatcatgtcaaccagttaggagtttagtgcctatgtcatgacaaaaccaaaatttgctcag-tttacattta--caataccaagaatgaaatac |
98 |
Q |
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| T |
30956699 |
aaggtcaatcacgtcacccatttaggagtttactgcctatgtcatgaaatcaccaaaatttgctcagctttatgttttttcaatgcaaagaatgaaatac |
30956798 |
T |
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| Q |
99 |
aaaatagaattaaaggttacaagcatatacggtcgacaatcgactgtatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattat |
198 |
Q |
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| T |
30956799 |
aaaatagaatgcaaggttacaagtatatacagtcgacag-------------aagttgttgcttttattgtgagagac-------ataaataaaaat--- |
30956875 |
T |
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| Q |
199 |
atgattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctaca |
263 |
Q |
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| T |
30956876 |
ataattatgtaaactcaaagtggtaaacttcaatgaacagacgagtttcttgcaagatgtctaca |
30956940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 30931765 - 30931869
Alignment:
| Q |
2 |
aaggtcaatcatgtcaaccagttaggagtttagtgcctatgtcatgacaaaa-ccaaaatttgctcag-tttacatttacaataccaagaatgaaataca |
99 |
Q |
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| T |
30931765 |
aaggtaaatcatgtcatgcagttaggagtttgctgcctatgtctggacaatcgccaaaatttgctttgctttacatttacaatacatagaatgaaataca |
30931864 |
T |
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| Q |
100 |
aaata |
104 |
Q |
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||||| |
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| T |
30931865 |
aaata |
30931869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 30962298 - 30962340
Alignment:
| Q |
197 |
atatgattatgtaaactcaaagtggtaaacttcaaagaataga |
239 |
Q |
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| T |
30962298 |
atatgattattcagactcaaagtggtaaacttcaaagaataga |
30962340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 30962164 - 30962236
Alignment:
| Q |
53 |
accaaaatttgctcagtttacatttacaataccaagaatgaaatacaaaatagaattaaaggttacaagcata |
125 |
Q |
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|||||||||| ||||| |||||||||| |||| |||||| ||||||||||| || ||||||||| ||||| |
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| T |
30962164 |
accaaaatttactcagcttacatttacgatacatagaatgcaatacaaaataatatgcaaggttacatgcata |
30962236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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