View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8701_low_22 (Length: 260)
Name: NF8701_low_22
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 20380990 - 20381227
Alignment:
| Q |
10 |
tggagaagcagagattcaaaggagaattgagaaacaaaattcaaagtataagactcatgagacagacattgcaagtgacattcattcaaagtatatgact |
109 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20380990 |
tggagaaacagacattcaaaggagaattgagaaacaaaattcaaagtataagactcatgagacagacattgcaagtgacattcattcaaagtatatgact |
20381089 |
T |
|
| Q |
110 |
catgagagagactttgaagatgaggaaaatcttgactt-cagacgagtctcttccaatcaggggagaacgatgaagaataatatggacttttcaagaaat |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
20381090 |
catgagacagactttgaagatgaggaaaatcttgacttaaagacgagtctcttccaatcaggggagaacgattaagaataatacggacttttcaagaaat |
20381189 |
T |
|
| Q |
209 |
ataaaaac----ttatgggactttcaaggaacaccact |
242 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| |
|
|
| T |
20381190 |
ataaaaacttaattatgggactttcaagtaacaccact |
20381227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 20400512 - 20400567
Alignment:
| Q |
153 |
gagtctcttccaatcaggggagaacgatgaagaataatatggacttttcaagaaat |
208 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
20400512 |
gagtctcttccaatccgaggagaacgttgaagaataatatgaaattttcaagaaat |
20400567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University