View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8701_low_23 (Length: 255)

Name: NF8701_low_23
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8701_low_23
NF8701_low_23
[»] chr6 (5 HSPs)
chr6 (152-239)||(13256318-13256405)
chr6 (18-123)||(22724621-22724727)
chr6 (190-234)||(22337258-22337302)
chr6 (199-234)||(22266986-22267021)
chr6 (81-123)||(17795455-17795497)
[»] scaffold0039 (4 HSPs)
scaffold0039 (5-123)||(64262-64380)
scaffold0039 (5-123)||(65987-66105)
scaffold0039 (184-244)||(64137-64197)
scaffold0039 (184-244)||(66170-66230)
[»] chr8 (4 HSPs)
chr8 (5-123)||(29388666-29388784)
chr8 (81-122)||(18450587-18450628)
chr8 (152-186)||(20685366-20685400)
chr8 (81-122)||(14755939-14755980)
[»] chr4 (2 HSPs)
chr4 (8-123)||(18618470-18618583)
chr4 (184-244)||(18618648-18618708)
[»] chr1 (1 HSPs)
chr1 (16-119)||(16884360-16884462)
[»] chr7 (2 HSPs)
chr7 (81-123)||(4007117-4007159)
chr7 (81-123)||(4012509-4012551)
[»] chr5 (1 HSPs)
chr5 (89-123)||(16510243-16510277)
[»] chr3 (1 HSPs)
chr3 (16-123)||(21487072-21487180)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 13256318 - 13256405
Alignment:
Q  152 gcaatcacacaagatcccatcttcaaaacctcttggaaagccacagagtcttcgaatctcaagcttccgtgcaatcccttgaacttct 239  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13256318 gcaatcacacaagatccaatcttcaaaacctcttggaaagccacagagtcttcgaatctcaagcttccgtgcaatcccttgaacttct 13256405  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 22724727 - 22724621
Alignment:
Q  18 ttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaa-tatttacaaatgtatgattaca 116  Q
    |||||||||||||||||||| | || |||| |  ||||  |||| || ||||||| ||| || ||||||||| |||| | ||||||| ||||||||||||    
T  22724727 ttttcgtcctcactaggggtacatcctctcatcttgatataaaatgtctctatcacggtcttccactctgataaaaaatgtttacaagtgtatgattaca 22724628  T
Q  117 aagattc 123  Q
    |||||||    
T  22724627 aagattc 22724621  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 22337302 - 22337258
Alignment:
Q  190 agccacagagtcttcgaatctcaagcttccgtgcaatcccttgaa 234  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||    
T  22337302 agccacaaggtcttcgaatctcaagcttccatgcaatcccttgaa 22337258  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 22267021 - 22266986
Alignment:
Q  199 gtcttcgaatctcaagcttccgtgcaatcccttgaa 234  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22267021 gtcttcgaatctcaagcttccatgcaatcccttgaa 22266986  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 17795455 - 17795497
Alignment:
Q  81 cactctgatgaaaatatttacaaatgtatgattacaaagattc 123  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  17795455 cactatgatgaaaatgtttacaagtgtatgattacaaagattc 17795497  T

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Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 64380 - 64262
Alignment:
Q  5 tagaggttcctccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaatatttacaaa 104  Q
    |||||||||| ||||||||||||| ||||||||   ||||||||| ||||| |||||||||||||     |  ||  ||| |||||||||| |||||||     
T  64380 tagaggttcccccttttcgtcctcgctaggggtatatcatctcttcgtgatagaaaacgtttctacagctggcttcgactatgatgaaaatgtttacaag 64281  T
Q  105 tgtatgattacaaagattc 123  Q
    |||||||||||||||||||    
T  64280 tgtatgattacaaagattc 64262  T

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Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 65987 - 66105
Alignment:
Q  5 tagaggttcctccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaatatttacaaa 104  Q
    |||||||||| ||||||||||||| ||||||||   ||||||||| ||||| |||||||||||||     |  ||  ||| |||||||||| |||||||     
T  65987 tagaggttcccccttttcgtcctcgctaggggtatatcatctcttcgtgatagaaaacgtttctacagctggcttcgactatgatgaaaatgtttacaag 66086  T
Q  105 tgtatgattacaaagattc 123  Q
    |||||||||||||||||||    
T  66087 tgtatgattacaaagattc 66105  T

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Target: scaffold0039; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 64197 - 64137
Alignment:
Q  184 ttggaaagccacagagtcttcgaatctcaagcttccgtgcaatcccttgaacttcttctct 244  Q
    ||||| |||||||  ||||||||||||||||||| | ||||| || |||||||||| ||||    
T  64197 ttggacagccacaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactct 64137  T

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Target: scaffold0039; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 66170 - 66230
Alignment:
Q  184 ttggaaagccacagagtcttcgaatctcaagcttccgtgcaatcccttgaacttcttctct 244  Q
    ||||| |||||||  ||||||||||||||||||| | ||||| || |||||||||| ||||    
T  66170 ttggacagccacaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactct 66230  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 29388666 - 29388784
Alignment:
Q  5 tagaggttcctccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaatatttacaaa 104  Q
    |||||||| | |||||||| ||||||||||||| | || |||||| |||||  |||||  |||||||| ||  || |||| |||||||||| | ||||||    
T  29388666 tagaggtttccccttttcgacctcactaggggtacatcctctcttagtgataaaaaacacttctatcacgggcttccactatgatgaaaatgtgtacaaa 29388765  T
Q  105 tgtatgattacaaagattc 123  Q
    |||||||| ||||||||||    
T  29388766 tgtatgataacaaagattc 29388784  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 18450628 - 18450587
Alignment:
Q  81 cactctgatgaaaatatttacaaatgtatgattacaaagatt 122  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  18450628 cactatgatgaaaatatttacaagtgtatgattacaaagatt 18450587  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 20685366 - 20685400
Alignment:
Q  152 gcaatcacacaagatcccatcttcaaaacctcttg 186  Q
    ||||||||||||||||| |||||||||||||||||    
T  20685366 gcaatcacacaagatccaatcttcaaaacctcttg 20685400  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 14755939 - 14755980
Alignment:
Q  81 cactctgatgaaaatatttacaaatgtatgattacaaagatt 122  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  14755939 cactatgatgaaaatgtttacaagtgtatgattacaaagatt 14755980  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 18618470 - 18618583
Alignment:
Q  8 aggttcctccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaatatttacaaatgt 107  Q
    ||||||| ||||||||||||| ||| |||| |||  |||||| ||||| ||||| |  | ||||| ||  ||||||| |||||||||| ||||||||| |    
T  18618470 aggttcccccttttcgtcctcgctacgggtacgt--tctcttcgtgatagaaaatgcctatatcacgggctttcactatgatgaaaatgtttacaaatat 18618567  T
Q  108 atgattacaaagattc 123  Q
    |||||| |||||||||    
T  18618568 atgattgcaaagattc 18618583  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 18618648 - 18618708
Alignment:
Q  184 ttggaaagccacagagtcttcgaatctcaagcttccgtgcaatcccttgaacttcttctct 244  Q
    ||||| |||||||  ||||| ||||||||||||| | ||||||||||| ||||||| ||||    
T  18618648 ttggacagccacaaggtctttgaatctcaagcttgcatgcaatcccttaaacttctactct 18618708  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 16884462 - 16884360
Alignment:
Q  16 ccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaatatttacaaatgtatgattac 115  Q
    |||||||||||||  ||||| | | ||||||||||||||  |||||||  ||||||| ||  || |||| |||||||||| ||||||| ||||| |||||    
T  16884462 ccttttcgtcctcgttaggg-tacatcatctctttgtgaaagaaaacgcctctatcacgggcttccactatgatgaaaatgtttacaagtgtataattac 16884364  T
Q  116 aaag 119  Q
    ||||    
T  16884363 aaag 16884360  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 4007159 - 4007117
Alignment:
Q  81 cactctgatgaaaatatttacaaatgtatgattacaaagattc 123  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  4007159 cactatgatgaaaatgtttacaagtgtatgattacaaagattc 4007117  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 4012551 - 4012509
Alignment:
Q  81 cactctgatgaaaatatttacaaatgtatgattacaaagattc 123  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  4012551 cactatgatgaaaatgtttacaagtgtatgattacaaagattc 4012509  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 16510243 - 16510277
Alignment:
Q  89 tgaaaatatttacaaatgtatgattacaaagattc 123  Q
    ||||||||||||||| |||||||||||||||||||    
T  16510243 tgaaaatatttacaagtgtatgattacaaagattc 16510277  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 21487072 - 21487180
Alignment:
Q  16 ccttttcgtcctcactaggggtgcgtcatctctttgtgattgaaaacgtttctatcaaggtttttcactctgatgaaaa-tatttacaaatgtatgatta 114  Q
    ||||||||||||| |||||||| || | ||||||  |||| ||||||   | ||||| ||| ||  ||| ||||||||| | ||||||| ||||||||||    
T  21487072 ccttttcgtcctcgctaggggttcgccctctcttcatgatagaaaacacctttatcatggtcttctactatgatgaaaaatgtttacaagtgtatgatta 21487171  T
Q  115 caaagattc 123  Q
    |||||||||    
T  21487172 caaagattc 21487180  T

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