View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_25 (Length: 240)
Name: NF8701_low_25
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45969418 - 45969196
Alignment:
| Q |
1 |
ttgtcgcagaaagaatgccactaacctgaatctacaggagcaacacgaccaatagccgattccccaaaatcaggatctaaaacttcttccgtccttttgt |
100 |
Q |
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| T |
45969418 |
ttgtcgcagaaagaatgccactaacctgaatctacaggagcaacgcgaccaatagccgattccccaaaatcaggatctaaaacttcttccgtctttttgt |
45969319 |
T |
|
| Q |
101 |
catcaaattccatagttttaactttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactctattaaaatagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45969318 |
catcaaattccatagttttaactttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactctattaaaatagaaa |
45969219 |
T |
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| Q |
201 |
agagaagaaaagttatatcatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45969218 |
agagaagaaaagttatatcatat |
45969196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 37654089 - 37654253
Alignment:
| Q |
23 |
aacctgaatctacaggagcaacacgaccaatagccgattccccaaaatcaggatctaaaacttcttc-cgtccttttgtcatcaaattccatagttttaa |
121 |
Q |
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| T |
37654089 |
aacctgaatctacaggtgcaactcgaccaatagctgattccccaaaatcaggatctaaaacttcttcacgt-gtatctccgtcaagagctacggttctaa |
37654187 |
T |
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| Q |
122 |
ctttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactct |
187 |
Q |
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| T |
37654188 |
ctttgaaactagcaggcatcaaaccctgtcctggactgtagcagtccacagttttctcccaactct |
37654253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 50761841 - 50761900
Alignment:
| Q |
24 |
acctgaatctacaggagcaacacgaccaatagccgattccccaaaatcaggatctaaaac |
83 |
Q |
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||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||| |||| |
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| T |
50761841 |
acctgaatcgacaggggcaacacggcctatagctgattcaccaaaatcaggatctgaaac |
50761900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 50761944 - 50762010
Alignment:
| Q |
121 |
actttgaaacttgcaggcatcaagccttgtcctgggctatagcagtccactgtcttctcccaactct |
187 |
Q |
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|||||||| || || |||||||| ||||| |||||||| ||||| || || |||||||||||||||| |
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| T |
50761944 |
actttgaagctcgctggcatcaacccttgccctgggctgtagcaatcaacggtcttctcccaactct |
50762010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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