View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_28 (Length: 219)
Name: NF8701_low_28
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11079570 - 11079758
Alignment:
| Q |
14 |
gaagaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctc |
113 |
Q |
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| T |
11079570 |
gaagaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgttttgttgagctttggaagcttagggagattttctaaggctc |
11079669 |
T |
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| Q |
114 |
aaattaatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagt |
202 |
Q |
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| T |
11079670 |
aaattaatcagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagt |
11079758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 11018828 - 11018973
Alignment:
| Q |
32 |
tgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagcta |
131 |
Q |
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| T |
11018828 |
tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttctagggctcaattgaatgagatagcta |
11018927 |
T |
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| Q |
132 |
ttggtttggaaaaaagtgaacaaagattcttgtggattgttaggag |
177 |
Q |
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| T |
11018928 |
ttggattggagaaaagtgagcaaagattcttgtgggttgttaggag |
11018973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 11002434 - 11002595
Alignment:
| Q |
19 |
agataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaatt |
118 |
Q |
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| T |
11002434 |
agatgaaaatgggtgtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttg |
11002533 |
T |
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| Q |
119 |
aatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcga |
180 |
Q |
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| T |
11002534 |
aatgagatagctattggattggagaaaagtgagcaaagattcttatggattgtaaggagcga |
11002595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 10982201 - 10982365
Alignment:
| Q |
16 |
agaagataaaagtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaa |
115 |
Q |
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| T |
10982201 |
agaagatgaaaatgggtgtctaagttggcttgagtcgcaacctattcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcag |
10982300 |
T |
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| Q |
116 |
attaatgagatagctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcga |
180 |
Q |
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| T |
10982301 |
ttgaatgagatagcacttggattggaaaaaagtgagcaaagattcttgtgggttattaggagcga |
10982365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 10968295 - 10968412
Alignment:
| Q |
60 |
gtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagatt |
159 |
Q |
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| T |
10968295 |
gtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaataagtgagcaaagatt |
10968394 |
T |
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| Q |
160 |
cttgtggattgttaggag |
177 |
Q |
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| T |
10968395 |
cttgtgggttgttaggag |
10968412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 18300190 - 18300086
Alignment:
| Q |
26 |
agtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgaga |
125 |
Q |
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| T |
18300190 |
agtgggtgtttgagttggctcaacttgcaacctagtcaaagtgttgtgtttttgagctttggaagctatggaagatttttaaagcgtcaaataaaagaga |
18300091 |
T |
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| Q |
126 |
tagct |
130 |
Q |
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| T |
18300090 |
tagct |
18300086 |
T |
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