View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8701_low_3 (Length: 552)
Name: NF8701_low_3
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 32 - 402
Target Start/End: Complemental strand, 44448221 - 44447857
Alignment:
| Q |
32 |
ataaactgaaagggg-ttaatgttaaagaaaaataagaagtgtccaaagaattttattgagacaaatgcttcactacagaacaagtaattttattgaa-t |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44448221 |
ataaactgaaagggggttaatgttaaagaaaaataagaagtgtccaaagaattttattgagacaaatgcttcactacagaacaagtaattttattgaaat |
44448122 |
T |
|
| Q |
130 |
catctcacattcttttacaaccgtatattgtgtacaaatcagttgacacaacatagattcatacatacatctatatgacaccaagctggaaacattctcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44448121 |
catctcacattcttttacaaccgtatattgtgtacatatcagttgacacaacatagattcatacata--------tgacaccaagctggaaacattctcc |
44448030 |
T |
|
| Q |
230 |
aaaccactcactcaaagcaaacaggaagattaacttaatactaatacacataaataagccaaaagcataattaattataagacaaagctaagcagaatga |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44448029 |
aaaccactcactcaaagcaaactggaagattaacttaatactaatacacataaataagccaaaagcataattaattataagacaaagctaagcagaatga |
44447930 |
T |
|
| Q |
330 |
atatctccataatatgcttgtgtgcttattatataattatattatacacatatgttcagccaaagaaatggtg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44447929 |
atatctccataatatgcttgtgtgcttattatataattatattatacacatatgttcagccaaagaaatggtg |
44447857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 453 - 542
Target Start/End: Complemental strand, 44447806 - 44447717
Alignment:
| Q |
453 |
catgatgctcatggaaggcgaacccgccggatcccactgcagctactgctgcaacttcttcttctatcttgtgcctgtgagcgttctctg |
542 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44447806 |
catgatgctcatggaaggcgaacccgccagatcccactgcagctactgctgcaacttcttcttctatcttgtgcctgtgagcgttctctg |
44447717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University