View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_5 (Length: 498)
Name: NF8701_low_5
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Original strand, 40076808 - 40077285
Alignment:
| Q |
7 |
tttggtggtcctgatttgttacacgacccttcagacaaaaccttctatgacgatccacaaacatgttacaccatggacaaaccagtgaaaaattgggacg |
106 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40076808 |
tttgctggtcctgattttttacacgacccttcagacaaaaccttctatgacgatccacaaacatgttacaccatggacaaaccagtgaaaaattgggacg |
40076907 |
T |
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| Q |
107 |
agaagcgtaaagaatggctacttcaccatccttcattcgtggtcggagcaagcgaaaagatacttgttataaccggttcacaacctacaaagtgtgacaa |
206 |
Q |
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| T |
40076908 |
agaagcgtaaagaatggctacttcaccatccttcattcgtggtcggagcaagcgaaaagatacttgttataacgggttcacaacctacaaagtgtgacaa |
40077007 |
T |
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| Q |
207 |
cccgattggcgaccaccttttactgcggttctttaaaaacaaggttgattattgtcgtatacacaaccacgacataatctacaacaatgcattgttgcac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40077008 |
cccgattggcgaccaccttttactgcggttctttaaaaacaaggttgattattgtcgtatacacaaccacgacataatctacaacaatgcattgttggac |
40077107 |
T |
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| Q |
307 |
ccaaaaatggacacttattgggccaagtatcctatggttcgggccgcaatgttggcccatccggaagttgaatggatatggtgggtcgactctgatgcca |
406 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077108 |
ccgaaaatggacacttattgggccaagtatcctatggttcgggccgcaatgttggcccatccggaagttgaatggatatggtgggtcgactctgatgcca |
40077207 |
T |
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| Q |
407 |
tcttcactgacatggagttcaagttaccgttatggcgttacaatgatcacaaccttgtgattcatggttgggaagagt |
484 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077208 |
tcttcactgacatggagttcaagttacccttatggcgttacaatgatcacaaccttgtgattcatggttgggaagagt |
40077285 |
T |
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