View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8701_low_6 (Length: 487)
Name: NF8701_low_6
Description: NF8701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8701_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 44064973 - 44065441
Alignment:
| Q |
1 |
tgtgaaagagagatagaaaccaaatgagatcgtgttgaatgaatgtcagggaatatgagatgtttgtgtattattgttgtataaatgaaatgacatgagg |
100 |
Q |
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| T |
44064973 |
tgtgaaagagagatagaaaccaaatgagatcatgttgaatgaatgtcagggattatgagatgtttgtgtattattgttgtataaatgaaatgacatgagg |
44065072 |
T |
|
| Q |
101 |
tcgtttcgtnnnnnnnntacatgaagtagagacatatatctgatataagggacgtatatgaagtagagatgtaaaatagttgaaaattataatgctttaa |
200 |
Q |
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| T |
44065073 |
tcgtttcgtaaaaaaaatacatgaagtagagacatatatctgatataggggacgtatatgaagtagagatgaaaaatagttgaaaattctaatgctttaa |
44065172 |
T |
|
| Q |
201 |
ttgaatttcctttgtttcatatatatgatattttaaaattttgaatgaacatatgacgttaaagtctcatagattttgcagcattgaagcgcattgttgc |
300 |
Q |
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| T |
44065173 |
ttgaatttcctttgtttcatatatatgatattttaaaattttgaatgaagatgtgatgttaaagtctagtagattttgcagcattgaagcgcattgttgc |
44065272 |
T |
|
| Q |
301 |
tctcgacactctctctaactccatgccatattcataattaattaatcaactaactcatgtagattgtatttacgtaaacaacaaaccaaaaagagtcgac |
400 |
Q |
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| T |
44065273 |
tctcgacactctctctaacttcatgccatattcataattaattaatcaactaactcatgtagattgtatttacgtaaacaacaaaccaaaaagagtcgac |
44065372 |
T |
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| Q |
401 |
aagttttggcttaatatagattgataagccaccattaacgattcaataaccgataaagtttaatgtgct |
469 |
Q |
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| T |
44065373 |
aagttttggcttaatatagattgataagccaccattaacgattcaataaccgataaagtttaatgtgct |
44065441 |
T |
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