View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8702_low_2 (Length: 478)
Name: NF8702_low_2
Description: NF8702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8702_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 18362879 - 18363346
Alignment:
| Q |
1 |
gatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa-----ctattagctagttatagacaatatttaaat |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18362879 |
gatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaatagaactattagctagttatagacaatatttaaat |
18362978 |
T |
|
| Q |
96 |
tttcatggcatatttttctaatttcgttaccatgatatggttgatcttgtttacgatttcatgttttaggataaaaatgacaggtttctaataggaacgt |
195 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18362979 |
tttcatggcatatttctctaatttcgttaccatgatatggttgatcttgtttacgatttcatgttttaggataaaaatgacaggtttctaataggaacgt |
18363078 |
T |
|
| Q |
196 |
aggtattttgggctgcctaagtcgtatgttgagtagtatgggatgctcggtggtggattgtggtttcgnnnnnnnnnnnngatagctagcttttaataga |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18363079 |
aggtattttgggctgcctaagtcgtatgttgagtagtatgggatgctcggtggtggattgtggtttcgttttttctttttgatagctagcttttaataga |
18363178 |
T |
|
| Q |
296 |
gagttttcctagttcttatatacttatcaattggtatcatacttagttgccgatggctcggaaagggctaccgagttatcgagattcaggataatgactc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363179 |
gagttttcctagttcttatatacttatcaattggtatcatacttagttgccgatggctcggaaagggctaccgagttatcgagattcaggataatgactc |
18363278 |
T |
|
| Q |
396 |
atgattcaagaaggaattcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363279 |
atgattcaagaaggaattcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
18363346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 463
Target Start/End: Original strand, 33834086 - 33834137
Alignment:
| Q |
412 |
ttcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
33834086 |
ttcatgtccaaattgatacgcactagagattcgtattgattaggttcaattt |
33834137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 30863973 - 30864021
Alignment:
| Q |
411 |
attcatgtccaaatagatacgcacttaagattcgtatcgattgggttca |
459 |
Q |
| |
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|||||||||||||||||||| |||| ||||| |||||||||| ||||| |
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|
| T |
30863973 |
attcatgtccaaatagatacacactagagatttgtatcgattgagttca |
30864021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 3019046 - 3019513
Alignment:
| Q |
1 |
gatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaa-----ctattagctagttatagacaatatttaaat |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3019046 |
gatctctataaagagtggaaatttactgaacaaggactacctgctgatctaatcaaaaggtacaatagaactattagctagttatagacaatatttaaat |
3019145 |
T |
|
| Q |
96 |
tttcatggcatatttttctaatttcgttaccatgatatggttgatcttgtttacgatttcatgttttaggataaaaatgacaggtttctaataggaacgt |
195 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3019146 |
tttcatggcatatttctctaatttcgttaccatgatatggttgatcttgtttacgatttcatgttttaggataaaaatgacaggtttctaataggaacgt |
3019245 |
T |
|
| Q |
196 |
aggtattttgggctgcctaagtcgtatgttgagtagtatgggatgctcggtggtggattgtggtttcgnnnnnnnnnnnngatagctagcttttaataga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3019246 |
aggtattttgggctgcctaagtcgtatgttgagtagtatgggatgctcggtggtggattgtggtttcgttttttctttttgatagctagcttttaataga |
3019345 |
T |
|
| Q |
296 |
gagttttcctagttcttatatacttatcaattggtatcatacttagttgccgatggctcggaaagggctaccgagttatcgagattcaggataatgactc |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3019346 |
gagttctcctagttcttatatacttatcaattggtatcataattagttgccgatggctcggaaagggctaccgagttatcgagattcaggataatgactc |
3019445 |
T |
|
| Q |
396 |
atgattcaagaaggaattcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3019446 |
atgattcaagaaggaatttgtgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
3019513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 44914886 - 44914835
Alignment:
| Q |
411 |
attcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |
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|
| T |
44914886 |
attcatgtccaaatagatacgtact-aagattcgtatcgattaggttcaattt |
44914835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 38340521 - 38340573
Alignment:
| Q |
411 |
attcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||||| |||||||| |
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|
| T |
38340521 |
attcatgtccaaatagatacacactagagattcgtattgattggtttcaattt |
38340573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 8082225 - 8082277
Alignment:
| Q |
411 |
attcatgtccaaatagatacgcacttaagattcgtatcgattgggttcaattt |
463 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||| |||||||||||||| |
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|
| T |
8082225 |
attcatgtccaaatagatacacactagagatctgtatcaattgggttcaattt |
8082277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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