View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8702_low_3 (Length: 411)
Name: NF8702_low_3
Description: NF8702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8702_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 39557155 - 39556774
Alignment:
| Q |
18 |
ttttccatttcacatgttttgttttgaaaaagtttaacaaaaagtggcgacaaaactatttcatttcaagtgatgttgcgttgatatatgtagcaatgta |
117 |
Q |
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| T |
39557155 |
ttttccatttcacatgttttgttttgaaaaagtttaacaaaaagtggcgacaaaactatttcatttcaagtgatgttgcgttgatatatgtaccaatgta |
39557056 |
T |
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| Q |
118 |
ccattctatgtgaagtaaataaaatcataactagaatgggatattaattaagatgaaaaacactactaagataacgttattaaaatcattttagaggttg |
217 |
Q |
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| T |
39557055 |
ccattctatgtgaagtaaataaaatcataactagaatgggatattaattaagatgaaaaacactactaagataacgttattaaaataattttagaggttg |
39556956 |
T |
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| Q |
218 |
attttgttcatcattcatcaaggcaacgtaactagttagtggaaccatatacatgtaacaatttgtggaaagcaaaattaacaacagaaagagaatgtgt |
317 |
Q |
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| T |
39556955 |
attttgttcatcattcatcaaggc-----aactagttagtggaaccatatacatgtaacaatttgtggaaagcaaaattaacaacagaaagagaatgtgt |
39556861 |
T |
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| Q |
318 |
tacctttcatgaatccactgcattccattccatatcctgcaacaagaaatcagaactatgttaaataattatattacacaacaccaa |
404 |
Q |
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| T |
39556860 |
tacctttcatgaatccactgcattccattccatatcctgcaacaagaaatcagaactatgttaaataattatattacacaacaccaa |
39556774 |
T |
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