View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8703_high_12 (Length: 207)

Name: NF8703_high_12
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8703_high_12
NF8703_high_12
[»] chr7 (4 HSPs)
chr7 (52-195)||(38181677-38181820)
chr7 (1-39)||(44604437-44604475)
chr7 (10-39)||(29257666-29257695)
chr7 (1-37)||(2846637-2846673)
[»] chr4 (10 HSPs)
chr4 (1-37)||(42185757-42185793)
chr4 (1-39)||(18849718-18849756)
chr4 (1-39)||(27655263-27655301)
chr4 (1-39)||(42024160-42024198)
chr4 (1-39)||(1825205-1825243)
chr4 (1-39)||(26185292-26185330)
chr4 (1-39)||(41203847-41203885)
chr4 (10-39)||(41710103-41710132)
chr4 (11-39)||(28974426-28974454)
chr4 (7-39)||(41371251-41371283)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-39)||(229932-229970)
[»] chr8 (8 HSPs)
chr8 (1-39)||(33925060-33925098)
chr8 (1-39)||(37219720-37219758)
chr8 (6-39)||(32241383-32241416)
chr8 (6-39)||(42558542-42558575)
chr8 (1-39)||(5392159-5392197)
chr8 (1-39)||(5962432-5962470)
chr8 (1-39)||(33190868-33190906)
chr8 (1-39)||(44790381-44790419)
[»] chr6 (1 HSPs)
chr6 (1-39)||(31265889-31265927)
[»] chr5 (7 HSPs)
chr5 (1-39)||(33988310-33988348)
chr5 (1-81)||(42575556-42575636)
chr5 (4-39)||(36446647-36446682)
chr5 (4-39)||(36469054-36469089)
chr5 (1-39)||(17242914-17242952)
chr5 (1-39)||(39008242-39008280)
chr5 (7-39)||(8692778-8692810)
[»] chr3 (10 HSPs)
chr3 (1-39)||(26134662-26134700)
chr3 (1-39)||(54122183-54122221)
chr3 (1-39)||(2868684-2868722)
chr3 (1-39)||(26143011-26143049)
chr3 (1-39)||(32023059-32023097)
chr3 (1-39)||(43639475-43639513)
chr3 (6-39)||(15280719-15280752)
chr3 (6-39)||(21296462-21296495)
chr3 (1-37)||(5245522-5245558)
chr3 (7-39)||(17274797-17274829)
[»] chr1 (5 HSPs)
chr1 (1-39)||(32348328-32348366)
chr1 (1-35)||(28839449-28839483)
chr1 (6-39)||(28908204-28908237)
chr1 (6-39)||(46496131-46496164)
chr1 (1-37)||(51848654-51848690)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-37)||(26716-26752)
[»] chr2 (7 HSPs)
chr2 (1-81)||(28572317-28572397)
chr2 (1-39)||(9472532-9472570)
chr2 (1-39)||(15859304-15859342)
chr2 (1-39)||(33755367-33755405)
chr2 (8-38)||(44534443-44534473)
chr2 (6-39)||(28527079-28527112)
chr2 (1-37)||(30757529-30757565)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 38181820 - 38181677
Alignment:
Q  52 tggctcggctaattcgggacggagggagtatatctaattgaattttaatttcaaggattttgacaagatatctgttggcatgcgactacgtaagatagat 151  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38181820 tggctcagctaactcgggactgagggagtatatctaattgaattttaatttcaaggattttgacaagatatctgttggcatgcgactacgtaagatagat 38181721  T
Q  152 gatcacacgaaacaaagcaaaagataattcaaccttcatgatgt 195  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  38181720 gatcacacaaagcaaagcaaaagataattcaaccttcatgatgt 38181677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44604475 - 44604437
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44604475 ttctctctccttcatttatacatttgtcttaatatgtgt 44604437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 29257666 - 29257695
Alignment:
Q  10 cttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||||||||||||||    
T  29257666 cttcatttatacatttgtcttaatatgtgt 29257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2846673 - 2846637
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||| |||| |||||||||||||||||||||||||||    
T  2846673 ttctctctcgttcatttatacatttgtcttaatatgt 2846637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42185793 - 42185757
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42185793 ttctatctccttcatttatacatttgtcttaatatgt 42185757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18849756 - 18849718
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  18849756 ttctttctccttcatttatacatttgtcttaatatgtgt 18849718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27655301 - 27655263
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27655301 ttctctctccttcatttatacatttgtcttaatatgtgt 27655263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42024198 - 42024160
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  42024198 ttctctctccttcatttatacatttgtcttaatatgtgt 42024160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1825243 - 1825205
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  1825243 ttctatctcctttatttatacatttttcttaatatgtgt 1825205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26185292 - 26185330
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  26185292 ttctctctccttcatttatacatttgtcttgatatgtgt 26185330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41203847 - 41203885
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  41203847 ttctatctccttcatttatacatttttcttaatacgtgt 41203885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 41710132 - 41710103
Alignment:
Q  10 cttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||||||||||||||    
T  41710132 cttcatttatacatttgtcttaatatgtgt 41710103  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 28974426 - 28974454
Alignment:
Q  11 ttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||||||||||    
T  28974426 ttcatttatacatttgtcttaatatgtgt 28974454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 41371283 - 41371251
Alignment:
Q  7 ctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||| ||||||||||||||||||    
T  41371283 ctccttcatttatatatttgtcttaatatgtgt 41371251  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 229932 - 229970
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  229932 ttctatctccttcatttatacatttgtcttaatacgtgt 229970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33925098 - 33925060
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33925098 ttctctctccttcatttatacatttgtcttaatatgtgt 33925060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37219758 - 37219720
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  37219758 ttctctctccttcatttatacatttgtcttaatatgtgt 37219720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 32241416 - 32241383
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||||||||||||||||||    
T  32241416 tctccttcatttatacatttgtcttaatatgtgt 32241383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 42558575 - 42558542
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||||||||||||||||||    
T  42558575 tctccttcatttatacatttgtcttaatatgtgt 42558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5392159 - 5392197
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  5392159 ttctctctccttcatttatacatttgtcttaataggtgt 5392197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5962470 - 5962432
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  5962470 ttctatctccttcatttatacattttccttaatatgtgt 5962432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33190906 - 33190868
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  33190906 ttctctcttcttcatttatacatttgtcttaatatgtgt 33190868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44790419 - 44790381
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  44790419 ttctctctccttcatttatacatttgtcttaatacgtgt 44790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31265889 - 31265927
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  31265889 ttctctctccttcatttatacatttgtcttaatatgtgt 31265927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33988310 - 33988348
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33988310 ttctttctccttcatttatacatttgtcttaatatgtgt 33988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42575636 - 42575556
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgtnnnnnnnnnnnntggctcggctaattcgggacggagggagta 81  Q
    |||| |||| |||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||    
T  42575636 ttctctctcattcatttatacatttgtcttaatatgtgtgaaatgaaaaaatggctcagctaattcgggacggagggagta 42575556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 36446682 - 36446647
Alignment:
Q  4 tatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||| |||||||||||||    
T  36446682 tatctccttcatttatacatttttcttaatatgtgt 36446647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 36469089 - 36469054
Alignment:
Q  4 tatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||| |||||||||||||    
T  36469089 tatctccttcatttatacatttttcttaatatgtgt 36469054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17242952 - 17242914
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  17242952 ttctctctcattcatttatacatttgtcttaatatgtgt 17242914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39008242 - 39008280
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  39008242 ttctctctccttcatttatacatttgttttaatatgtgt 39008280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 8692810 - 8692778
Alignment:
Q  7 ctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||| ||||||||||||||||||    
T  8692810 ctccttcatttatatatttgtcttaatatgtgt 8692778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26134700 - 26134662
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  26134700 ttctctctccttcatttatacatttgtcttaatatgtgt 26134662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 54122221 - 54122183
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  54122221 ttctctctccttcatttatacatttgtcttaatatgtgt 54122183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2868684 - 2868722
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  2868684 ttctctctccttcatttatacatttttcttaatatgtgt 2868722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26143011 - 26143049
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  26143011 ttctctctcctttatttatacatttgtcttaatatgtgt 26143049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32023097 - 32023059
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32023097 ttctatctccttcatttatacattttccttaatatgtgt 32023059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43639513 - 43639475
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  43639513 ttctctctccttcatttatatatttgtcttaatatgtgt 43639475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 15280719 - 15280752
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||| |||||||||||||    
T  15280719 tctccttcatttatacatttatcttaatatgtgt 15280752  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 21296495 - 21296462
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||||||||| |||||||    
T  21296495 tctccttcatttatacatttgtcttagtatgtgt 21296462  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5245522 - 5245558
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||| |||||||||| |||||||||||||||||||||    
T  5245522 ttctctctccttcatgtatacatttgtcttaatatgt 5245558  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 17274797 - 17274829
Alignment:
Q  7 ctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||||||| |||||||||||||    
T  17274797 ctccttcatttatacatttttcttaatatgtgt 17274829  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32348328 - 32348366
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32348328 ttctctctccttcatttatacatttgtcttaatatgtgt 32348366  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28839449 - 28839483
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  28839449 ttctctctccttcatttatacatttgtcttaatat 28839483  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 28908204 - 28908237
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||| |||||||||||||    
T  28908204 tctccttcatttatacatttttcttaatatgtgt 28908237  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 46496131 - 46496164
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||||||||| ||||||||||||||||||    
T  46496131 tctccttcatttatatatttgtcttaatatgtgt 46496164  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51848690 - 51848654
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||||||||| |||||||||||||| |||||||||||    
T  51848690 ttctatctccatcatttatacatttatcttaatatgt 51848654  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26716 - 26752
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  26716 ttctctctccttcatttatacatttgtcttaatatgt 26752  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28572317 - 28572397
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgtnnnnnnnnnnnntggctcggctaattcgggacggagggagta 81  Q
    |||| ||||||| ||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||    
T  28572317 ttctctctcctttatttatacatttgtcttaatatgtgtgaaatgaaaaaatggctcagctaattcgggacggagggagta 28572397  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9472532 - 9472570
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  9472532 ttctatctctttcatttatacatttttcttaatatgtgt 9472570  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15859342 - 15859304
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  15859342 ttctctctccttcatttatatatttgtcttaatatgtgt 15859304  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33755367 - 33755405
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  33755367 ttctctctccttcatttatacatttgtcttaatacgtgt 33755405  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 44534473 - 44534443
Alignment:
Q  8 tccttcatttatacatttgtcttaatatgtg 38  Q
    |||||||||||||||||||||||||||||||    
T  44534473 tccttcatttatacatttgtcttaatatgtg 44534443  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 28527079 - 28527112
Alignment:
Q  6 tctccttcatttatacatttgtcttaatatgtgt 39  Q
    |||||||||||||||||||| |||||||||||||    
T  28527079 tctccttcatttatacatttttcttaatatgtgt 28527112  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30757565 - 30757529
Alignment:
Q  1 ttctatctccttcatttatacatttgtcttaatatgt 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  30757565 ttctctctccttcatttatacatttttcttaatatgt 30757529  T

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