View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_high_2 (Length: 420)
Name: NF8703_high_2
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 198 - 395
Target Start/End: Complemental strand, 27565640 - 27565443
Alignment:
| Q |
198 |
aataacaattcagtaacaaggtaaactattttactgaatgacatcagtacttatagattatgatgggctgtagtgagagacaacagctcacaaaccacca |
297 |
Q |
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| T |
27565640 |
aataacaattcagtaacaaggtaaactattttactgaatgacatcagtacttatagattatgatgggctgtagtgagagacaacagctcacaaaccacca |
27565541 |
T |
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| Q |
298 |
catggtgttgtcttatagattttcagagccacaagatgttttagaataatggccctctttatagatgagtcacccacatatttacagctagaataatc |
395 |
Q |
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| T |
27565540 |
catggtgttgtcttatagattttcagagccacaagatgttttagaataatggccctctttatagatgagtcacccacatatttacagctagaataatc |
27565443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 27426384 - 27426463
Alignment:
| Q |
161 |
acatgaggtaccttcccttcataagaaacaggtgcacaataacaattcagtaacaaggtaaactattttactgaatgaca |
240 |
Q |
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| T |
27426384 |
acatgaggtaacttcccttcataaagaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgaca |
27426463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 390
Target Start/End: Complemental strand, 27569445 - 27569308
Alignment:
| Q |
257 |
atgatgggctgtagtgagagacaacagctcacaaaccaccacatggtgttgtcttatagattttca----gagccacaagatgttttagaataatggccc |
352 |
Q |
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| T |
27569445 |
atgatgggatttactgagagaaaacgactgacgaaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatggccc |
27569346 |
T |
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| Q |
353 |
tctttatagatgagtcacccacatatttacagctagaa |
390 |
Q |
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| T |
27569345 |
gctttgtagatgagtcacctacatatttattgctagaa |
27569308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 27420925 - 27420995
Alignment:
| Q |
284 |
ctcacaaaccaccacatggtgttgtcttatagattttc----agagccacaagatgttttagaataatggc |
350 |
Q |
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| T |
27420925 |
ctcactaaccaccacatggtgttgtcttatagattttcatcaagagacacaagagattttagaataatggc |
27420995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 27416380 - 27416425
Alignment:
| Q |
268 |
tagtgagagacaacagctcacaaaccaccacatggtgttgtcttat |
313 |
Q |
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| T |
27416380 |
tagtgagagacaacagctcaagaaccaccacatggtgctgtcttat |
27416425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 27416186 - 27416314
Alignment:
| Q |
112 |
acataatacagacatgaa-ttcaaatgttgg-gtaccaaagccttagtcatacatgaggtaccttcccttcataagaaacaggtgcacaataacaattca |
209 |
Q |
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|||||||| ||||||||| || |||| |||| || ||||||| ||| || ||||||| |||| |||| ||||||| ||| || ||||||| ||||||| |
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| T |
27416186 |
acataatatagacatgaaattaaaattttggagtgccaaagctttaatcttacatgaagtacattcctttcataa---acaagtacacaataccaattca |
27416282 |
T |
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| Q |
210 |
gtaacaaggtaaactattttactgaatgacat |
241 |
Q |
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| T |
27416283 |
tcaacaagggaaattatttcactgaatgacat |
27416314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 27413449 - 27413481
Alignment:
| Q |
290 |
aaccaccacatggtgttgtcttatagattttca |
322 |
Q |
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| T |
27413449 |
aaccatcacatggtgttgtcttatagattttca |
27413481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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