View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_high_3 (Length: 402)
Name: NF8703_high_3
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_high_3 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 47650469 - 47650083
Alignment:
| Q |
1 |
ttattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaaatgagatagccttggaacataaacc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650469 |
ttattgatactgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaaatgagatagccttggaacataaacc |
47650370 |
T |
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| Q |
101 |
agatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgtattagatttactatataaatataggt |
200 |
Q |
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| T |
47650369 |
agatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgtattagatttactatataaatataggt |
47650270 |
T |
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| Q |
201 |
aatttaattttatacgtaaacatatacgatatttctacttgtattatttacaggaaattagtaacaggaacaaatcaaataaatctaaacaagttataaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47650269 |
aatttaattttatacgtaaacatatactatatttctacttgtattatttacaggaaattagttacaggaacaaatcaaataaatctaaacaagttataaa |
47650170 |
T |
|
| Q |
301 |
tcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctccttttgttggtatattt |
387 |
Q |
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| T |
47650169 |
tcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctccttttgttggtatattt |
47650083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 170408 - 170641
Alignment:
| Q |
1 |
ttattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaaatgagatagccttggaacataaacc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
170408 |
ttattgatactgctaaaagactatatcgaaatcatagatgtagatttcataaacactttagccaatacaagacaaatgagatagctttggaacataaacc |
170507 |
T |
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| Q |
101 |
agatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgtattagatttactatataaatataggt |
200 |
Q |
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| T |
170508 |
agatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaatgtatgtttgtattatatttactatataaatataggc |
170607 |
T |
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| Q |
201 |
aatttaattttatacgtaaacatatacgatattt |
234 |
Q |
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| T |
170608 |
aatttaattctatacgtaaacatctactatattt |
170641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 170660 - 170727
Alignment:
| Q |
308 |
tgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcctttt |
375 |
Q |
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| T |
170660 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatatataatatcaaatctcctttt |
170727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 387
Target Start/End: Complemental strand, 30754353 - 30754218
Alignment:
| Q |
256 |
aattagtaacaggaacaaatcaaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatat |
355 |
Q |
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||||||||| |||||||||| |||||| |||||||||||||| ||| |||| |||||||||| | |||||||| ||||||||||| |||||| ||||| |
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| T |
30754353 |
aattagtaaaaggaacaaattaaataagtctaaacaagttattaattgtagacgtggaaggaatttatttcaagttgttagctatgacgcggtataatat |
30754254 |
T |
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| Q |
356 |
---aaaatatcaaatctc-cttttgttggtatattt |
387 |
Q |
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| T |
30754253 |
aaaaaaatataaaatctctctttttttggtatattt |
30754218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 37332920 - 37332844
Alignment:
| Q |
229 |
atatttctacttgtattatttacaggaaattagtaacaggaacaaatcaaataaatctaaacaagttataaatcata |
305 |
Q |
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||||||||| |||||||||||||||| |||||| | |||||||||||||||||| | ||||||||||| ||||||| |
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| T |
37332920 |
atatttctatttgtattatttacaggcaattagcgaaaggaacaaatcaaataaagcaaaacaagttattaatcata |
37332844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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