View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_high_7 (Length: 353)
Name: NF8703_high_7
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 48733165 - 48732813
Alignment:
| Q |
1 |
tcagtttacatccaagtccaataaccaaatctctatgattaattttgtcaaaggccaaattcattctaacacattgaacaaccccactccccctctcacc |
100 |
Q |
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| T |
48733165 |
tcagtttacatccaagtccaataaccaaatctctatgattaattttgtcagaggccaaattcattctaacacattgaacaaccccactccccctctcacc |
48733066 |
T |
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| Q |
101 |
ttccacccacaaacatgaagctaattgaacttccacagttccactaaaggaatgacttatataatttatttagaatcatctcataacatacagaatgtca |
200 |
Q |
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| T |
48733065 |
ttccacccacaaacatgaagctaattgaacttccacagttccactaaaggaatgacttatataatttatttagaatcatctcataacatacagaatgtca |
48732966 |
T |
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| Q |
201 |
tgatactattataaaagtaacttataatatgctcattcgttattttcagctcatttcaataagctctctatcataaaatnnnnnnncacttaattgaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48732965 |
tgatactattataaaagtaacttataatatgctcatgcgttattttcagctcatttcaataagctctctatcataaaataaaaaaacacttaattgaata |
48732866 |
T |
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| Q |
301 |
cgaacgtacttaaactatcaagacatcctcttatcaccaccatattgatatat |
353 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48732865 |
cgaacgtacttaaactaacaagacatcctcttatcaccaccatattgatatat |
48732813 |
T |
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