View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_low_1 (Length: 827)
Name: NF8703_low_1
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_low_1 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 776; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 22 - 809
Target Start/End: Original strand, 6315716 - 6316503
Alignment:
| Q |
22 |
cacttccatactagaactgtcattagattgttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatgataaaaaagattaca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315716 |
cacttccatactagaactgtcattagattgttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatgataaaaaagattaca |
6315815 |
T |
|
| Q |
122 |
gtattggtcacaactcacaagcatcttgtactataatgttacagatcaaataaagccaattatttaacacacacgccacacctacctaagcttacaaatg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6315816 |
gtattggtcacaactcacaagcatcttgtactataatgttacagatcaaataaagccaattatttaacacacacggcacacctacctaagcttacaaatg |
6315915 |
T |
|
| Q |
222 |
aatgctgcacattgatccgatcctaatatgcaagcagaacaaacacagcggcaatagatcgcaatgggtactaaactgatgaaataacagcagccacgac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315916 |
aatgctgcacattgatccgatcctaatatgcaagcagaacaaacacagcggcaatagatcgcaatgggtactaaactgatgaaataacagcagccacgac |
6316015 |
T |
|
| Q |
322 |
agatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagtagaaaaataaaaactcaagagcgatgttgtacctatgaatta |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316016 |
agatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagtagaaaaataaaaactcaagagcgatgttgtacctatgaatta |
6316115 |
T |
|
| Q |
422 |
tatctcataattctctctttccaaaggtatgatgaaatcaattctttcttttccaagggcttttcttcggcaaagtgctttcctttatagaatttatata |
521 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6316116 |
tatctcataattctctctttccaaaggtatggtgaaatcaattctttcttttccaagggcttttctttggcaaagtgctttcctttatagaatttatata |
6316215 |
T |
|
| Q |
522 |
atattgagttttccatttacacatataaccccattaaagatgaacaaaaacaaataggaaagagatgcaaacattcaaaatagacatatccggaacgaca |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316216 |
atattgagttttccatttacacatataaccccattaaagatgaacaaaaacaaataggaaagagatgcaaacattcaaaatagacatatccggaacgaca |
6316315 |
T |
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| Q |
622 |
aaaatatcatcacaatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacat |
721 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316316 |
aaaatatcatcacaatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacat |
6316415 |
T |
|
| Q |
722 |
aaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttat |
809 |
Q |
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| T |
6316416 |
aaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttat |
6316503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 21532406 - 21532470
Alignment:
| Q |
312 |
cagccacgacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
376 |
Q |
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| T |
21532406 |
cagccaccactgatgttaaacatacacttagaatcagttctgtccccatcttcactattaaagaa |
21532470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 22905671 - 22905596
Alignment:
| Q |
301 |
tgaaataacagcagccacgacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
376 |
Q |
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| T |
22905671 |
tgaaataacaccagccaccactgatgttacacataaacatagaatcagttctctccccatcttcactattaaagaa |
22905596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 55323357 - 55323569
Alignment:
| Q |
188 |
acacacacgccacacctacctaagct-tacaaatgaatgctgcacattgatccgatcctaatatgca-----agcagaacaaacacagcggcaatagatc |
281 |
Q |
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|||||||| ||||||||||||||| |||||||||||| |||||||||||| | ||||||||| || |||||| ||||||||||||||| | ||| |
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| T |
55323357 |
acacacaccgcacacctacctaagcactacaaatgaatgttgcacattgatcgggtcctaatatacaaatgcagcagagcaaacacagcggcaacacatc |
55323456 |
T |
|
| Q |
282 |
g-caatgggtactaaactgatgaaataac-agcagccacgacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaaagt |
379 |
Q |
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| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||| ||| || || |||||||||||||| |
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| T |
55323457 |
gtcaatgggtactaaactgatgaaataacaataagccacaacagatgttaaacagaaactc--aatcagttctgcccccatctttgctactaaagaaagt |
55323554 |
T |
|
| Q |
380 |
agaaaaataaaaact |
394 |
Q |
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||||||||||||||| |
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| T |
55323555 |
agaaaaataaaaact |
55323569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 51819685 - 51819827
Alignment:
| Q |
52 |
ttatcttttgcaaaggaagaattgtcattacattatgatcacaaccataccaatgat----aaaaaagattacagtattggt----cacaactcacaagc |
143 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||||||| |||||| || |||||||||||||| |
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| T |
51819685 |
ttatatttttcaaaggaggaattgtcattacattatgataacaaccgtaccattgataaaaaaaaaagattgtagtattagtcacacacaactcacaagc |
51819784 |
T |
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| Q |
144 |
atcttgtactataatgttacagatcaaataaagccaattattt |
186 |
Q |
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| T |
51819785 |
atcttgtattattgtgatacagatcagacaaagccaattattt |
51819827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 10641600 - 10641525
Alignment:
| Q |
301 |
tgaaataacagcagccacgacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
376 |
Q |
| |
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|||||||||| ||||||| || ||||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||| |
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| T |
10641600 |
tgaaataacaccagccaccactgatgttacacataaacttagaatcagttctgtccccatcttcactattaaagaa |
10641525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 3364 - 3428
Alignment:
| Q |
312 |
cagccacgacagatgttaaacagaaactcagaatcagttctgtccctattttcactactaaagaa |
376 |
Q |
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||||||| || ||||||||||| | ||| ||||||||||||||||| || ||||||| ||||||| |
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| T |
3364 |
cagccaccactgatgttaaacatacacttagaatcagttctgtccccatcttcactattaaagaa |
3428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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