View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8703_low_14 (Length: 220)
Name: NF8703_low_14
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_low_14 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18079699 - 18079480
Alignment:
| Q |
1 |
gagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagtctttca |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
18079699 |
gagacatttggacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagtctttca |
18079600 |
T |
|
| Q |
101 |
gcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079599 |
gcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaata |
18079500 |
T |
|
| Q |
201 |
caacaaatcacatcaatagt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
18079499 |
caacaaatcacatcaatagt |
18079480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 51480058 - 51479838
Alignment:
| Q |
1 |
gagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttc |
99 |
Q |
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||||| ||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
51480058 |
gagacttttggacgaaaaagtaccttgtctctttgcttctatctccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagttctttc |
51479959 |
T |
|
| Q |
100 |
agcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaat |
199 |
Q |
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| |||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
51479958 |
accatatacttggagagctcgaactcatggttgttgttggtttctgtcttcgttttaatttcctgtagtgaaccagatgatcacatttcaaatgtagaat |
51479859 |
T |
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| Q |
200 |
acaacaaatcacatcaatagt |
220 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
51479858 |
acaacaaatcacatgaatagt |
51479838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 30207298 - 30207495
Alignment:
| Q |
16 |
aaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggag |
114 |
Q |
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|||| ||| ||||||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
30207298 |
aaaaataccttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagtattttcaacatatacttggag |
30207397 |
T |
|
| Q |
115 |
agctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcaca |
212 |
Q |
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||||| |||||||||| ||| ||||| | ||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
30207398 |
agctcaacctcatggtcattgtaggtttctcgcttatctttaattgcctgtagtaaaccagattatcacatttcaaatgtagaatgcaacaaatcaca |
30207495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 51497073 - 51496884
Alignment:
| Q |
25 |
ttgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacc |
123 |
Q |
| |
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|||| |||||||| |||| |||||||| ||||||| ||||||||| | | ||||||||||||| |||| ||||||||||||| |||||| |||| ||| |
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| T |
51497073 |
ttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgacttaaatatggaaaaagtactttcagcatatatttggagggctcaacc |
51496974 |
T |
|
| Q |
124 |
tcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattat-cacatttcaaatatagaatacaacaaatcaca |
212 |
Q |
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|||||| || ||||||||| |||||| |||||||| |||| ||||| | ||||||| | ||||| |||| |||||||||| |||||||| |
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| T |
51496973 |
tcatggctgttgttggtttccgtcttctttttaatttcctgcagtgaccaagattatccccattttaaatgtagaatacaaaaaatcaca |
51496884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 51455535 - 51455436
Alignment:
| Q |
27 |
gtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctc |
125 |
Q |
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||||||| ||| || | |||||||| | |||||||||| ||||| | | |||||||| |||||||||| ||||||||| |||||| |||| ||| ||||| |
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| T |
51455535 |
gtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtcctttcagcagatacttagagaactcaacctc |
51455436 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 27396064 - 27395957
Alignment:
| Q |
14 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
112 |
Q |
| |
|
|||||| ||| |||| ||| ||| |||| ||||||||| |||||||||||| |||| ||| | |||||| ||||||||| |||| ||||||||||||| |
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| T |
27396064 |
gaaaaaataccttgtaacttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttgg |
27395965 |
T |
|
| Q |
113 |
agagctcg |
120 |
Q |
| |
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||| |||| |
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| T |
27395964 |
agaactcg |
27395957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 137941 - 138043
Alignment:
| Q |
14 |
gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg |
112 |
Q |
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|||||| ||| |||| |||| ||| |||| |||||||| ||||||||||| ||| || |||||||||||||||||| | ||||||||||||||||| |
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| T |
137941 |
gaaaaaataccttgtatcttggcttctatctccttctcagccatttgttctagatctaattctcttaaatatggaagaaggtatttcagcatatacttgg |
138040 |
T |
|
| Q |
113 |
aga |
115 |
Q |
| |
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||| |
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|
| T |
138041 |
aga |
138043 |
T |
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