View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8703_low_2 (Length: 711)

Name: NF8703_low_2
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8703_low_2
NF8703_low_2
[»] chr6 (22 HSPs)
chr6 (18-676)||(7132098-7132756)
chr6 (18-561)||(7135136-7135679)
chr6 (320-561)||(7138059-7138300)
chr6 (411-664)||(6423710-6423963)
chr6 (404-627)||(6427023-6427246)
chr6 (258-554)||(19633012-19633314)
chr6 (365-632)||(8913372-8913639)
chr6 (276-675)||(7993412-7993799)
chr6 (167-301)||(6593685-6593819)
chr6 (372-469)||(6417092-6417189)
chr6 (416-538)||(6596238-6596360)
chr6 (414-540)||(10579099-10579225)
chr6 (185-309)||(14821544-14821668)
chr6 (570-672)||(6403366-6403468)
chr6 (594-676)||(6594139-6594221)
chr6 (399-631)||(6410532-6410765)
chr6 (400-460)||(14809708-14809768)
chr6 (367-450)||(9412143-9412223)
chr6 (401-450)||(28935357-28935406)
chr6 (402-469)||(6593920-6593987)
chr6 (414-460)||(6395546-6395592)
chr6 (551-625)||(10579302-10579376)
[»] chr7 (3 HSPs)
chr7 (318-469)||(10615713-10615864)
chr7 (365-469)||(10169002-10169106)
chr7 (365-469)||(10176527-10176631)
[»] chr1 (5 HSPs)
chr1 (344-460)||(19467362-19467478)
chr1 (504-664)||(33161000-33161160)
chr1 (166-309)||(33161355-33161498)
chr1 (389-471)||(7555196-7555278)
chr1 (402-460)||(33161207-33161265)
[»] chr4 (16 HSPs)
chr4 (400-460)||(553768-553828)
chr4 (184-471)||(21833048-21833335)
chr4 (420-469)||(571330-571379)
chr4 (322-443)||(53760205-53760323)
chr4 (387-460)||(661867-661940)
chr4 (387-460)||(1755562-1755635)
chr4 (428-460)||(1547718-1547750)
chr4 (423-471)||(3437630-3437678)
chr4 (368-438)||(532773-532843)
chr4 (281-327)||(532878-532924)
chr4 (185-303)||(1552293-1552411)
chr4 (387-453)||(8186333-8186399)
chr4 (407-452)||(1545881-1545926)
chr4 (222-307)||(1546023-1546108)
chr4 (594-631)||(3438186-3438223)
chr4 (422-471)||(55907684-55907733)
[»] chr3 (3 HSPs)
chr3 (343-469)||(51763323-51763446)
chr3 (372-469)||(13469608-13469705)
chr3 (411-460)||(1657536-1657585)
[»] chr5 (2 HSPs)
chr5 (185-317)||(17205870-17206002)
chr5 (410-453)||(28532829-28532872)
[»] chr8 (8 HSPs)
chr8 (367-453)||(5766559-5766645)
chr8 (281-469)||(17642806-17642991)
chr8 (368-453)||(14004159-14004244)
chr8 (420-469)||(21236154-21236203)
chr8 (389-469)||(17635632-17635712)
chr8 (424-460)||(32151977-32152013)
chr8 (411-460)||(28246056-28246105)
chr8 (412-457)||(34935986-34936031)
[»] scaffold1155 (1 HSPs)
scaffold1155 (277-452)||(1753-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (277-452)||(8291-8463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (277-452)||(30516-30688)
[»] chr2 (1 HSPs)
chr2 (422-471)||(1036620-1036669)


Alignment Details
Target: chr6 (Bit Score: 623; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Complemental strand, 7132756 - 7132098
Alignment:
Q  18 agagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgttcgtatttacctgatgagtgttg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132756 agagaacttgttccctaaaatcatgttcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgttcgtatttacctgatgagtgttg 7132657  T
Q  118 ggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgt 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132656 ggaaattatcttcaggttcatccacaaagacggcttcaagcaacgctgcttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgt 7132557  T
Q  218 cgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132556 cgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 7132457  T
Q  318 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7132456 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgg 7132357  T
Q  418 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtttt 517  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  7132356 gttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattgtttt 7132257  T
Q  518 ccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatac 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132256 ccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatac 7132157  T
Q  618 aacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 676  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132156 aacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 7132098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 7135679 - 7135136
Alignment:
Q  18 agagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgttcgtatttacctgatgagtgttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135679 agagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgttcgtatttacctgatgagtgttg 7135580  T
Q  118 ggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135579 ggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgt 7135480  T
Q  218 cgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135479 cgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactaca 7135380  T
Q  318 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7135379 acgatgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgg 7135280  T
Q  418 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtttt 517  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  7135279 gttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatctgttacttattgccgattgtttt 7135180  T
Q  518 ccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa 561  Q
    |||||||  |||||||||||||||||||||| ||||||| ||||    
T  7135179 ccaatgcacaaagaactcaaccttggtcaccttttggtgcacaa 7135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 320 - 561
Target Start/End: Complemental strand, 7138300 - 7138059
Alignment:
Q  320 ggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggt 419  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7138300 ggtgacctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggt 7138201  T
Q  420 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttcc 519  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7138200 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttcc 7138101  T
Q  520 aatgcttaaagaactcaaccttggtcaccctttggtgaacaa 561  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  7138100 aatgcttaaagaactcaaccttggtcaccttttggtgcacaa 7138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 411 - 664
Target Start/End: Complemental strand, 6423963 - 6423710
Alignment:
Q  411 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 510  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  511 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 610  Q
    |||||| ||| |||| ||||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |    
T  6423863 ttgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaa 6423764  T
Q  611 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 664  Q
    ||||||||||||||| |||||   ||||  ||||||||||| ||| ||||||||    
T  6423763 tgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgtt 6423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 6427246 - 6427023
Alignment:
Q  404 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta 503  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  |    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcaccca 6427147  T
Q  504 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 603  Q
    |||  |||||||| ||  |||| ||| ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||    
T  6427146 ttgttgattgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaa 6427047  T
Q  604 gtggcgatgtatacaacatttgga 627  Q
    ||| | ||||||||||||||||||    
T  6427046 gtgtccatgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 258 - 554
Target Start/End: Complemental strand, 19633314 - 19633012
Alignment:
Q  258 tcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctccttt 357  Q
    |||||||||||||  ||| |||||| |||||||||| |||||| ||||||||| | | ||||  |||  |  ||   ||||| |  |||||||||| ||     
T  19633314 tcctcggtcgcctattcagaaggtttaccaacctcatctccctcgacctctcacaattcaaccatgatgtcaaccaccttctgcgtaaaatctctcgtta 19633215  T
Q  358 cccactaaagaaactcacatcccttagtatctc---caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgaca 454  Q
    |||| | |||||||||||||| ||| |||||||   |||||||  | |||||||  ||||||||||||||||||||||| ||| |||||||||||||||     
T  19633214 cccattgaagaaactcacatctctttgtatctctagcaaccaattcccctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacc 19633115  T
Q  455 tctctcgattgttccaatacgtttctctacaacaacgatctgttact---tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctt 551  Q
    ||||||  |||  |  | | |||||||||||||||||| ||||||||    |||||||||||||| ||| || | |||||||||||||| | | ||||||    
T  19633114 tctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgttgaaagaactcaacctcgcttaccctt 19633015  T
Q  552 tgg 554  Q
    |||    
T  19633014 tgg 19633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 365 - 632
Target Start/End: Original strand, 8913372 - 8913639
Alignment:
Q  365 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 464  Q
    |||||||||||||| || | |||||||||||||   ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||    
T  8913372 aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaatt 8913471  T
Q  465 gttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatca 564  Q
    ||||||| | ||||||  | |||||| | |||||| |  |||  | |||||| ||  |||||||||||||||||||| ||||| | ||||| ||| ||||    
T  8913472 gttccaacatgtttcttgataacaacaaactgttattcgttgttggttgtttccctttgcttaaagaactcaaccttagtcacaccttggtcaactatca 8913571  T
Q  565 aacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctta 632  Q
     |  ||  || |||||  |||||||  | ||||||||||||| | |||| |||||||||||| |||||    
T  8913572 cagtaatgtctttaattaaattcaccatttgttatccaagtgtcaatgtttacaacatttggttctta 8913639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 276 - 675
Target Start/End: Original strand, 7993412 - 7993799
Alignment:
Q  276 aaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcac 375  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||| |  |||||||||||| | |||| |   |||||||| ||||||||  |  |||  ||||    
T  7993412 aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac 7993511  T
Q  376 atcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacg 475  Q
    |||||||| ||||||| |||||  || |||||| ||  |||| |||||||| ||  ||||||||||||||| |||||| |||||| |||||||||||||     
T  7993512 atcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatact 7993611  T
Q  476 tttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttca 575  Q
    |||||    ||   ||  |||||||| |||||| ||||||| ||  |||| |||||||||||||| ||||            ||||| | || | || ||    
T  7993612 tttcttggtaagggcggcctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggtc------------acaatgacactagctaca 7993699  T
Q  576 ttaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtc 675  Q
    |||||| | |||||| | |||| |||||||| ||||||||||||||||| |||||||   | |  |||||||||||||||  ||||||| ||||||||||    
T  7993700 ttaatgaatttcactatttgttgtccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtc 7993799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 167 - 301
Target Start/End: Original strand, 6593685 - 6593819
Alignment:
Q  167 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtc 266  Q
    ||||||||||| ||  | || |||||| ||||  |||| ||||| |||||||  ||||||||| || |||||||| ||| ||||  ||||||||||||||    
T  6593685 ttgaattctctatccctcgtatccaaacagtttttctctatcattgaccgtctccgattctcaatctttgtcaaaaatggaacactccctttcctcggtc 6593784  T
Q  267 gcctcctcaaaaggttcaccaacctcaactccctt 301  Q
    |||||||| ||||||||||||||||||| ||||||    
T  6593785 gcctcctcgaaaggttcaccaacctcaaatccctt 6593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 372 - 469
Target Start/End: Complemental strand, 6417189 - 6417092
Alignment:
Q  372 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    ||||||| |||| |||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417189 tcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 6596238 - 6596360
Alignment:
Q  416 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 515  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  516 ttccaatgcttaaagaactcaac 538  Q
    | ||| |||| ||||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 540
Target Start/End: Original strand, 10579099 - 10579225
Alignment:
Q  414 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 513  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  514 ttttccaatgcttaaagaactcaacct 540  Q
    ||| ||| |||| ||||||||||||||    
T  10579199 tttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 14821668 - 14821544
Alignment:
Q  185 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 284  Q
    ||||||||  |||||||||| |||| | | |||| |||||| ||||| | | ||||||| |||||| |||||||||||  |   ||| ||||||||||||    
T  14821668 gtctccaagcagttcctctctatcaccaatcgtcttcgattttcacttaatatcaaagaggcaacacgccctttcctcttttctctcttcaaaaggttca 14821569  T
Q  285 ccaacctcaactcccttgacctctc 309  Q
    ||||||||| |||||||||| ||||    
T  14821568 ccaacctcacctcccttgacttctc 14821544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 672
Target Start/End: Complemental strand, 6403468 - 6403366
Alignment:
Q  570 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 669  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  670 gtt 672  Q
    |||    
T  6403368 gtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 676
Target Start/End: Original strand, 6594139 - 6594221
Alignment:
Q  594 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 676  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | |||||||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtct 6594221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 631
Target Start/End: Complemental strand, 6410765 - 6410532
Alignment:
Q  399 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgtt 498  Q
    ||||||||||   ||||||||||| || ||||||||||||||||||||||||||| ||| ||  |||  || |   |||  |  | |||||| | ||| |    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgcccctacgtgttatttgataacaacaacctgat 6410666  T
Q  499 acttattgccgattgttttccaatgcttaaagaactcaa-ccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgtt 597  Q
    |||  |||| |||||||| ||| |||| ||||||||||| |||   |||||||| | | ||  ||| | | || ||||||||||||||||||| | ||||    
T  6410665 actctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaatggaattcactatctgtt 6410566  T
Q  598 atccaagtggcgatgtatacaacatttggatctt 631  Q
    ||||||||| | |||| |||||||| ||||||||    
T  6410565 atccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  400 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 9412223 - 9412143
Alignment:
Q  367 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 450  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  9412223 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  401 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 450  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 469
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  402 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  414 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  551 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 625  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 318 - 469
Target Start/End: Complemental strand, 10615864 - 10615713
Alignment:
Q  318 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 417  Q
    ||||||||||||||   ||||||| ||||||||||| |||||||  |  |||  ||||||| |||| ||| |||||||||| |||  |||| ||||||||    
T  10615864 acggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgg 10615765  T
Q  418 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  10615764 gttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 10169002 - 10169106
Alignment:
Q  365 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 464  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10169002 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10169101  T
Q  465 gttcc 469  Q
    |||||    
T  10169102 gttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 10176527 - 10176631
Alignment:
Q  365 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 464  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10176527 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10176626  T
Q  465 gttcc 469  Q
    |||||    
T  10176627 gttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 19467362 - 19467478
Alignment:
Q  344 aaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatta 443  Q
    |||||||||| ||||||| | || ||||||||||| || | ||||||||||  ||||||| |||| |||||||||||||||| |||| | ||||| ||||    
T  19467362 aaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatatta 19467461  T
Q  444 caactttgacatctctc 460  Q
    |||||||||| ||||||    
T  19467462 caactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 664
Target Start/End: Complemental strand, 33161160 - 33161000
Alignment:
Q  504 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 603  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  604 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 664  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| ||||||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgtt 33161000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 33161498 - 33161355
Alignment:
Q  166 cttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggt 265  Q
    |||||||||||| ||  | ||||||||| |||| ||||||||||   |  ||| ||||||||||||||   ||||| |  |||||  ||||||||||  |    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcaccctcaaaaactcaacacaccctttcctccct 33161399  T
Q  266 cgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 309  Q
    || ||| | ||||||||||||||||||| |||||||||||||||    
T  33161398 cgtctcttgaaaaggttcaccaacctcacctcccttgacctctc 33161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  389 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 471  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  402 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  400 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 184 - 471
Target Start/End: Original strand, 21833048 - 21833335
Alignment:
Q  184 tgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttc 283  Q
    |||||||||| | ||||||||||||||||| | || |||||| ||||| | ||||    || ||||| ||||| || || ||| |||| ||||||| |||    
T  21833048 tgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattc 21833147  T
Q  284 accaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccctta 383  Q
    |||||||| | ||||||| |||||||   || | ||||||||||  |||  |||||||   ||||||||| |||||||  |  |||  |||  || || |    
T  21833148 accaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactca 21833247  T
Q  384 gtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 471  Q
     |||||||||| ||| |||| |||| ||| |||||||||||| |||  | ||||||||||| |||||||| ||||||  |||||||||    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  420 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 322 - 443
Target Start/End: Original strand, 53760205 - 53760323
Alignment:
Q  322 tgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttg 421  Q
    ||||||||||| | |||| | || |||||||| ||||||| |   |||||||||||| || | | |||||||||||  |||  | | |||||||||||||    
T  53760205 tgaccttgacaaggttcttcgcagaatctctcgtttcccatt---gaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttg 53760301  T
Q  422 cgagctttctcccaaaacatta 443  Q
    |||||||||| |||||||||||    
T  53760302 cgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 661940 - 661867
Alignment:
Q  387 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661940 tctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 1755635 - 1755562
Alignment:
Q  387 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755635 tctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  428 ttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  423 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 471  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 532843 - 532773
Alignment:
Q  368 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaa 438  Q
    ||||||||||| || | | |||| |||||||||||| |||| ||||||||||| ||||| |||||| ||||    
T  532843 aaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 532924 - 532878
Alignment:
Q  281 ttcaccaacctcaactcccttgacctctcaaactacaacggtgacct 327  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||    
T  532924 ttcaccaacctcacctcccttgaccttacaagctacaacggtgacct 532878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 1552293 - 1552411
Alignment:
Q  185 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 284  Q
    ||||||||| |||||| ||| |||| ||||||||  |||||||| |||| |||     |  ||||| ||||||||||| | | |||  |||||||||||     
T  1552293 gtctccaaacagttcccctctatcaccgaccgtctccgattctctctcagtgtttggaagccaacacgccctttcctccgccaccttttcaaaaggttct 1552392  T
Q  285 ccaacctcaactcccttga 303  Q
    |||||||||||||||||||    
T  1552393 ccaacctcaactcccttga 1552411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 8186333 - 8186399
Alignment:
Q  387 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 453  Q
    |||| ||| ||| |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186333 tctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  407 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 452  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 1546108 - 1546023
Alignment:
Q  222 gattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctc 307  Q
    |||| ||||||||| ||| | || ||||| ||||||| ||   | ||||||||||||||||||||| ||||| ||||||| |||||    
T  1546108 gattgtcactcattatcagaaattcaacacgcccttttcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctc 1546023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  594 tgttatccaagtggcgatgtatacaacatttggatctt 631  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  422 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 471  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 343 - 469
Target Start/End: Original strand, 51763323 - 51763446
Alignment:
Q  343 caaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatt 442  Q
    ||||||||||| ||||||| |   |||||||||||| |||| | ||||||| || |  ||||||||| ||||||||||||||| ||| || ||||| |||    
T  51763323 caaaatctctcgtttcccatt---gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagatt 51763419  T
Q  443 acaactttgacatctctcgattgttcc 469  Q
    ||||||||||||||||||  |||||||    
T  51763420 acaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 469
Target Start/End: Original strand, 13469608 - 13469705
Alignment:
Q  372 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    ||||||| |||| | |||||||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469608 tcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  411 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 17206002 - 17205870
Alignment:
Q  185 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 284  Q
    ||||||||| |||| ||||| |||| |||| ||   ||||||||||||| |||| | |||  ||||  ||||||| | |||| |||| ||||||||||||    
T  17206002 gtctccaaacagttactctctatcaccgacagtttccgattctcactcactgtctatgatcaaacacaccctttctttggtcacctcttcaaaaggttca 17205903  T
Q  285 ccaacctcaactcccttgacctctcaaactaca 317  Q
    |||||||||  ||||||||| ||||| ||||||    
T  17205902 ccaacctcacatcccttgacttctcacactaca 17205870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 453
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  410 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 453  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 453
Target Start/End: Original strand, 5766559 - 5766645
Alignment:
Q  367 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 453  Q
    |||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766559 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 469
Target Start/End: Original strand, 17642806 - 17642991
Alignment:
Q  281 ttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccc 380  Q
    ||||||| ||||  |||||| ||||| ||| ||||||| ||||||||  ||| |||| || |||| ||||||  ||| ||| |   |||||||||||| |    
T  17642806 ttcaccagcctcgcctccctcgacctttcacactacaaaggtgacctaaacaagcttatcaacaagatctcttgttttccatt---gaaactcacatcac 17642902  T
Q  381 ttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    | | | |||||||||| | |||| ||||  | |||||||| | |||||||||||| || |||||||||||||| ||||||  |||||||    
T  17642903 tcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 14004244 - 14004159
Alignment:
Q  368 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 453  Q
    ||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  420 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 17635632 - 17635712
Alignment:
Q  389 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 469  Q
    |||||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635632 tccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  424 agctttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  411 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 460  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  412 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 457  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 1753 - 1925
Alignment:
Q  277 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 376  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  1753 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 1849  T
Q  377 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 452  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  1850 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 452
Target Start/End: Complemental strand, 8463 - 8291
Alignment:
Q  277 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 376  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  8463 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 8367  T
Q  377 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 452  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  8366 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 30516 - 30688
Alignment:
Q  277 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 376  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  30516 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 30612  T
Q  377 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 452  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  30613 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  422 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 471  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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