View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_low_3 (Length: 445)
Name: NF8703_low_3
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 31852971 - 31852568
Alignment:
| Q |
17 |
gaagtaagtgctccatccgagtggaggtattgacacttgaaacagaagccagtattttggggcttgtttcggacgcaatcccaaataggcctttacatat |
116 |
Q |
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| T |
31852971 |
gaagtaagtgctccatccgagtggaggtattgacacttgaaacagaagccagtattttggggcttgtttcggacgcaatcccaaataggcctttacatat |
31852872 |
T |
|
| Q |
117 |
aattttcttaaatctgttgtaacatcatccacatccacatactgtacttcaaccttattgccagatgaatctttcaccacaagattagcttcattaacct |
216 |
Q |
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| T |
31852871 |
aattttcttaaatctgttgtaacatcatccacatccacatactgtacttcaaccttattgcccgatgaatctttcaccacaagattagcttcattaacct |
31852772 |
T |
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| Q |
217 |
gatgaaaattatcacctttagcatgata-tggaaatgttgtatattgcaatgtcacgagcaaatgatatattcttactggtattctgactatatcggtac |
315 |
Q |
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| T |
31852771 |
gatgaaaattatcacctttagcatgatattggacatgttgtatatgacaatgtcacgagcaaatgatatattcttactggtattctgactatatcggtac |
31852672 |
T |
|
| Q |
316 |
gattccatccaagggggttatacaccacaactacctggatacaaatcattaacataggtcacatactcacataaaattgaacaaccatgtcagtttaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31852671 |
gattccatccaagggggttatacaccacaactacctggatacaaatcattaacatagg--------tcacataaaattgaacaaccatgtcagtttaaat |
31852580 |
T |
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| Q |
416 |
cagttttacaca |
427 |
Q |
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|||||||||||| |
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| T |
31852579 |
cagttttacaca |
31852568 |
T |
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