View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8703_low_6 (Length: 396)
Name: NF8703_low_6
Description: NF8703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8703_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 40279872 - 40280237
Alignment:
| Q |
19 |
ccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggatt |
118 |
Q |
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| T |
40279872 |
ccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggatt |
40279971 |
T |
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| Q |
119 |
catccattcaccgggtgcatgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtct |
218 |
Q |
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| T |
40279972 |
catccattcaacgggtgcacgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtct |
40280071 |
T |
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| Q |
219 |
tgttgaaacttacagactttgcattcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttag |
318 |
Q |
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| T |
40280072 |
tgttgaaacttacagactttgcattcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcg |
40280171 |
T |
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| Q |
319 |
aagtggcccatgggaatggcggtggaactgtcatgctcttagttagtcgtctctttttcacaggtt |
384 |
Q |
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| T |
40280172 |
aagtggcccatgggaatggtggtggaactgccatgctcttagttagtcgtctctttttcacaggtt |
40280237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 40458478 - 40458113
Alignment:
| Q |
19 |
ccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggatt |
118 |
Q |
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| T |
40458478 |
ccaacagcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggatt |
40458379 |
T |
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| Q |
119 |
catccattcaccgggtgcatgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtct |
218 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458378 |
catccattcaacgggtgcacgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtct |
40458279 |
T |
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| Q |
219 |
tgttgaaacttacagactttgcattcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttag |
318 |
Q |
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| T |
40458278 |
tgttgaaacttacagactttgcattcaagagttccagagatagtattgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttcg |
40458179 |
T |
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| Q |
319 |
aagtggcccatgggaatggcggtggaactgtcatgctcttagttagtcgtctctttttcacaggtt |
384 |
Q |
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| T |
40458178 |
aagtggcccatgggaatggtggtggaactgccatgctcttagttagtcgtctctttttcacaggtt |
40458113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 40284835 - 40285165
Alignment:
| Q |
21 |
aacagcaagaacaaccaatttatatttctcttctttgtcatcaatggatgcattgctttctcttgtccacaactcttgcagtttggtatcactggattca |
120 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||| |
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| T |
40284835 |
aacagcaagaacaaccaattgatgtttctcttctttgtcatcaatggatgcattgctttctcttttccacaagtctcgcagttcggtatcacaggattca |
40284934 |
T |
|
| Q |
121 |
tccattcaccgggtgcatgatcacacatctcgttccttctttcctctatgaaccttgtcactttctcaaaattctcaaccaaatcaaactgaatgtcttg |
220 |
Q |
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| T |
40284935 |
tccattcaccgggtgcacgatcacacatctcattccttctttcctctatgaaccttgtcactttcctgaaattctcaaccaaatcaaactgaatgtcttg |
40285034 |
T |
|
| Q |
221 |
ttgaaacttacagactttgcattcaagagttccagagatagtcttgagtttcactacggataacatgtggtcaagtgtgtgcaagatggcacgtttagaa |
320 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||||| |||| | || ||||| ||| |
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| T |
40285035 |
ttgaaacttacagaatttgcattcaagagttccagagatagtctggagtttcaatacagataacaagtggtccagtgtgtacaaggtagcgcgttttgaa |
40285134 |
T |
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| Q |
321 |
gtggcccatgggaatggcggtggaactgtca |
351 |
Q |
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|| |||||| |||| || ||||| ||||||| |
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| T |
40285135 |
gttgcccataggaacggtggtggtactgtca |
40285165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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