View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8704_high_5 (Length: 226)

Name: NF8704_high_5
Description: NF8704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8704_high_5
NF8704_high_5
[»] chr7 (12 HSPs)
chr7 (13-209)||(2096948-2097146)
chr7 (53-151)||(2071306-2071404)
chr7 (53-151)||(2103271-2103371)
chr7 (56-150)||(2136868-2136964)
chr7 (147-209)||(2124457-2124519)
chr7 (30-151)||(2054890-2055012)
chr7 (56-151)||(2247434-2247531)
chr7 (154-209)||(2103388-2103443)
chr7 (23-70)||(2119412-2119459)
chr7 (154-208)||(2136983-2137037)
chr7 (156-209)||(2247361-2247414)
chr7 (115-151)||(2054201-2054237)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 2096948 - 2097146
Alignment:
Q  13 tttggtgttcagattaaacctcactgaaatatcaaaatgtaattcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactctta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  2096948 tttggtgttcagattaaacctcactgaaatatcaaaatgtaattcaaagcacactctttcaaacaacctttattgcttttacatagaaaggaaactctta 2097047  T
Q  113 --gaatgcaattacaagaacagaaggaaactaagacaaatattggactaatatgtttattgctttggactcacatgacccttttaagctataacataaa 209  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097048 cagaatgcaattacaagaacagaaggaaactaagacaaatattggactaatatgtttattgctttggactcacatgacccttttaagctataacataaa 2097146  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 2071306 - 2071404
Alignment:
Q  53 aattcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactcttagaatgcaattacaagaacagaaggaaactaagacaaata 151  Q
    ||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  2071306 aattcaaagcacgctctatcgaacaacctttattgcttttacatacaaaggaaactcttaatatgcaattacaagaacagaaggaaactaaaacaaata 2071404  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 2103271 - 2103371
Alignment:
Q  53 aattcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactcttaga--atgcaattacaagaacagaaggaaactaagacaaat 150  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||    
T  2103271 aattcaaagcacgctctttcgaacaacctttattgcttttacatacaaaggaaactcttacaatatgcaattacaagaacagaaggaaactaaaacaaat 2103370  T
Q  151 a 151  Q
    |    
T  2103371 a 2103371  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 2136868 - 2136964
Alignment:
Q  56 tcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactctt--agaatgcaattacaagaacagaaggaaactaagacaaat 150  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  2136868 tcaaagcacgctctttcaaacaacctttattgcttttacatacataggaaactcttacagaatgcaattacaagaacagaaggaaactaaaacaaat 2136964  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 2124457 - 2124519
Alignment:
Q  147 aaatattggactaatatgtttattgctttggactcacatgacccttttaagctataacataaa 209  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2124457 aaatattggactaatatgtttattgctttggactcatatgacccttttaagctataacataaa 2124519  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 2054890 - 2055012
Alignment:
Q  30 acctcactgaaatatcaaaatgtaattcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactcttaga--atgcaattacaag 127  Q
    |||||| |||| || ||||||||||||||| ||| |||||||||||||| ||||||||||||| || | |||||||||||||| |  |||||||||||||    
T  2054890 acctcaatgaattaccaaaatgtaattcaatgcacgctctttcaaacaa-ctttattgcttttacacagaaaggaaactcttacaatatgcaattacaag 2054988  T
Q  128 aacagaaggaaactaagacaaata 151  Q
    |||||||| ||||| | |||||||    
T  2054989 aacagaagaaaactgaaacaaata 2055012  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 2247531 - 2247434
Alignment:
Q  56 tcaaagcatgctctttcaaacaacctttattgcttttgcatacaaaggaaactcttagaa--tgcaattacaagaacagaaggaaactaagacaaata 151  Q
    |||||| ||||| |||| ||||||||| || |||||| ||| ||||||||||||||| ||  || ||||||||||||||||||||||||| |||||||    
T  2247531 tcaaaggatgctttttccaacaaccttaatggcttttacatgcaaaggaaactcttacaaaatgaaattacaagaacagaaggaaactaaaacaaata 2247434  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 2103388 - 2103443
Alignment:
Q  154 ggactaatatgtttattgctttggactcacatgacccttttaagctataacataaa 209  Q
    |||||||||| |||||||| || |||||||| ||||||||||| | ||||||||||    
T  2103388 ggactaatatctttattgcattcgactcacaagacccttttaaaccataacataaa 2103443  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 2119412 - 2119459
Alignment:
Q  23 agattaaacctcactgaaatatcaaaatgtaattcaaagcatgctctt 70  Q
    ||||||||||||| ||||||| |||||| |||||||||| ||||||||    
T  2119412 agattaaacctcattgaaataccaaaatataattcaaagaatgctctt 2119459  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 2136983 - 2137037
Alignment:
Q  154 ggactaatatgtttattgctttggactcacatgacccttttaagctataacataa 208  Q
    |||||| ||||||||||| ||||||||||||  |||||||||||| |||| ||||    
T  2136983 ggactagtatgtttattgttttggactcacaacacccttttaagccataaaataa 2137037  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 2247414 - 2247361
Alignment:
Q  156 actaatatgtttattgctttggactcacatgacccttttaagctataacataaa 209  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||    
T  2247414 actaatatgtttattgctatggactcacaatactattttaagccataacataaa 2247361  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 2054201 - 2054237
Alignment:
Q  115 atgcaattacaagaacagaaggaaactaagacaaata 151  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  2054201 atgcaattacaagaacaaaaggaaactaaaacaaata 2054237  T

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