View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8704_low_1 (Length: 485)
Name: NF8704_low_1
Description: NF8704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8704_low_1 |
 | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 40110231 - 40109821
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
40110231 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgaggaagcgcagatcctttcttcagct |
40110132 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40110131 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactatcattgatcaattattagaaaagattaaa |
40110032 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40110031 |
ttccattctttatggtggttacaggctaataatgccttgtttgtgcatgacacttagatgtggtggtcggaccctatgttatgtctgggtatcgactgac |
40109932 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
40109931 |
cgtaattttataaatattgtttgactgttctttttaaggggtggccttttagtacatcttgtgctgaaatggtttcagagcctatgtttataaattccat |
40109832 |
T |
|
| Q |
408 |
tttgatgtttt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
40109831 |
tttgatgtttt |
40109821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 19469146 - 19469553
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || | |
|
|
| T |
19469146 |
ttggtgtttctagtgttgactctattgatctctgtgaccatttccttcaattcattcattgtacaggtcacccgaggaagcgcagatcctttcttcagct |
19469245 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19469246 |
gttgtggttactctgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattgatcaattattagaaaagattaaa |
19469345 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
19469346 |
ttccattctttatgatggctacaagctaataatgccttgtttgtgcatgacactcacatgtggtggtcggatcctatgttatgtctgagtatcgactgac |
19469445 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
19469446 |
cgtacttttgtaaatattgtttgactgttcttttttaggggtggccctccagtacatcttgtactgaaccggtttcactgcctatgtacatatattccat |
19469545 |
T |
|
| Q |
408 |
tttgatgt |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
19469546 |
tttgatgt |
19469553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 415
Target Start/End: Original strand, 18844892 - 18845299
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| || | |
|
|
| T |
18844892 |
ttggtgtttctagtgttgactctattgatatatttgaccatttccttcaattcattcattgtacaggacactcgaggaaacgcagatcctttcttcagct |
18844991 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
| |||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18844992 |
gctgtggttactttgtgtctaggtagtttgaaatgaactcatcaatagaatatttaataatatccaaactaccattgatcaattattagaaaagattaaa |
18845091 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|||||||||||||||| | | ||| |||||||| ||||||||||||||| |||||||| || ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
18845092 |
ttccattctttatggtagctgcagactaataatgccttgtttgtgcatggtactcagatgtgatggtcggaccctatgttatgtctaggtatcgactgac |
18845191 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||||| || | | |||||| | ||||||||||||| |||||| |||| ||||| || |||| ||| ||||||| |
|
|
| T |
18845192 |
cgtacttttgtaaatattgtttgactgttcttgtttacgagtggcccttcagtacatcttgtactgaaacggtttcactgtctgtgttaatatattccat |
18845291 |
T |
|
| Q |
408 |
tttgatgt |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
18845292 |
tttgatgt |
18845299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 33 - 415
Target Start/End: Original strand, 11579824 - 11580206
Alignment:
| Q |
33 |
tgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaag-ttgttgtggttactttgtgtctgggt |
131 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||| | ||||| || ||||||||| || ||| || ||||| || ||||||||||||||||| |
|
|
| T |
11579824 |
tgatatttgtgaacacttctatcaattcattcattgtacatggcactcaagggcgcgcagatctttccttcagcttgtt-tgtttactttgtgtctgggt |
11579922 |
T |
|
| Q |
132 |
agtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacag |
231 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||||| ||||| || ||| | |||||||| ||||||| |||||||| |||||| || || |
|
|
| T |
11579923 |
ggtttagaatgaacgtaatgatagaatatttaataacatccaaaccaccatagaacaacttctagaaaaggttaaatttcattctttgtggtggctaaag |
11580022 |
T |
|
| Q |
232 |
gctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttga |
331 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
11580023 |
gctaataacgcctcgtttgtgcatgacactcagatgtggtggtcgaaccctatgttatgtttgggtatcgactgactgaacttttgtaaatattgtttga |
11580122 |
T |
|
| Q |
332 |
ctgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgt |
415 |
Q |
| |
|
||||||| ||| |||||| | | ||||||||||||||||| |||| ||||| | |||| ||| | ||||||||||||| |
|
|
| T |
11580123 |
ctgttctctttgtggggtgatcctttggtacatcttgtgctgaagaggtttcactgtcggtgttaatataatccattttgatgt |
11580206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 332
Target Start/End: Complemental strand, 12562878 - 12562579
Alignment:
| Q |
33 |
tgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaag-ttgttgtggttactttgtgtctgggt |
131 |
Q |
| |
|
|||||| ||||| || ||| ||||||||||||| |||||| | ||||| || | ||| |||||||| ||| || ||||| |||||||||||||| ||||| |
|
|
| T |
12562878 |
tgatatctgtgagcacttctttcaattcattcactgtacaaggcactcaaggatgcgaagatccttcctttagcttgtt-tggttactttgtgtttgggt |
12562780 |
T |
|
| Q |
132 |
agtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacag |
231 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| ||||||||| ||||| || |||||| |||||||| |||||| |||||||| ||||| | || |
|
|
| T |
12562779 |
ggtttggaaagagcgtaataactaaatatttaataatatccaaaccaccatagaacaattagtagaaaaggttaaatatcattctttgtggtgacttaag |
12562680 |
T |
|
| Q |
232 |
gctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttga |
331 |
Q |
| |
|
| ||||||| ||| |||| ||||||| ||| |||| ||||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
12562679 |
gttaataatgcctggtttttgcatgagactgagatgtggtggttggatcctatgttatatctgggtatcgactgaccatagttgtgtaaatattgtttga |
12562580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 291
Target Start/End: Complemental strand, 18634740 - 18634563
Alignment:
| Q |
114 |
gttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccat |
213 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||| || | ||||||||||| |||||||| |||| |||||| | |||||||| ||||||| ||| |
|
|
| T |
18634740 |
gttactttgtttctgtatggtttggaatgaacgtaataacaaaatatttaataacatccaaaccaccacagatcaactcttagaaaaagttaaatttcat |
18634641 |
T |
|
| Q |
214 |
tctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgt |
291 |
Q |
| |
|
| || ||||| | | |||||||||||| ||||||| ||| | |||||| ||||||||| || ||| |||||||| |
|
|
| T |
18634640 |
ttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatgt |
18634563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 32624136 - 32624072
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
32624136 |
tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac |
32624072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 144387 - 144451
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
144387 |
tggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac |
144451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 39072915 - 39072849
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaacta |
178 |
Q |
| |
|
|||||||| | ||| ||| |||||||||||||||| || |||| ||||||||| | ||||||||||| |
|
|
| T |
39072915 |
tggttactgtttgtgtggatagtttggaatgaacgaaataatataatatttaagaatatccaaacta |
39072849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 7300450 - 7300357
Alignment:
| Q |
116 |
tactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaatt |
209 |
Q |
| |
|
|||||||||||||| | |||||||||||| | ||||| || ||||||||| |||||||| ||||||| ||| | |||||||| ||||||| |
|
|
| T |
7300450 |
tactttgtgtctggatggtttggaatgaatgcaacaacggactatttaataacatccaaacccccattgaacaactcatagaaaaggttaaatt |
7300357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 17689775 - 17689702
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattga |
185 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||| || |||||| ||||||| |
|
|
| T |
17689775 |
tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga |
17689702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 17431393 - 17430983
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || | |
|
|
| T |
17431393 |
ttggtgtttctagtgttgactcttttgatatatgtgaccatttccttcaattcattcattgtacaggtcactcgaggaagcacagatcctttcttcagct |
17431294 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17431293 |
gttgtggttactttgtgtctggttagtttggaatgaacgtaacaatagaatatttaataatatcaaaactaccattgatcaattattagaaaagattaaa |
17431194 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
17431193 |
ttccattctttatggtggttagaggctaataatgccttgtttgtgcatgacactcagatgtggtggtcggaccctatgttatgtttgggtatcgactgac |
17431094 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17431093 |
cgtaattttgtaaatattgtttgactgttctttttaaggggtggcctttcagtacatcttgtgctgaaatggttccactgcctatatttataaattccat |
17430994 |
T |
|
| Q |
408 |
tttgatgtttt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
17430993 |
tttgatgtttt |
17430983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 119 - 418
Target Start/End: Complemental strand, 41612470 - 41612171
Alignment:
| Q |
119 |
tttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattcttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41612470 |
tttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactaccattgatcaattattagaaaagattaaattccattcttt |
41612371 |
T |
|
| Q |
219 |
atggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgt |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | |||||| || |||||||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41612370 |
atggtggttacaggctaataatgccttgtttgtgcacggcactcaaatgtggtggtcggaccctatgttatgtctgggtatcgactgaccgtaattttgt |
41612271 |
T |
|
| Q |
319 |
aaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgtttt |
418 |
Q |
| |
|
|||||||||||| || |||||||||||||||| |||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41612270 |
aaatattgtttgcctattctttttaaggggtgacctttcagtacatcttgttctaaaatggttccggtgcctatgtttataaattccattttgatgtttt |
41612171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 41865673 - 41865779
Alignment:
| Q |
312 |
attttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttg |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41865673 |
attttgcaaatattgtttgactgttctttttaagaggtggtcttccagtacatcttgtgctgaaatggttccactgtctatgtttataaattccattttg |
41865772 |
T |
|
| Q |
412 |
atgtttt |
418 |
Q |
| |
|
||||||| |
|
|
| T |
41865773 |
atgtttt |
41865779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 379690 - 379577
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
||||||||| |||||||| | || ||||||| |||||||||||||||||||||| || |||||| ||| | || ||| | ||||| || ||||||| | |
|
|
| T |
379690 |
tggttacttggtgtctggatggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttagagaaagttaaatttc |
379591 |
T |
|
| Q |
212 |
attctttatggtgg |
225 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
379590 |
attcgttatggtgg |
379577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 4421486 - 4421341
Alignment:
| Q |
230 |
aggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgttt |
329 |
Q |
| |
|
||||||||||| || ||| |||||| || ||||| |||||||| |||| |||||||| |||||||||||||||| || ||||||||||||| | |
|
|
| T |
4421486 |
aggctaataatgccaattttatgcatggtacgcagatgtggtggtcgaatcccttgttatgtttgggtatcgactgactatagacttgtaaatattgtat |
4421387 |
T |
|
| Q |
330 |
gactgttctttttaaggggtggccttccagtacatcttgtgctgaa |
375 |
Q |
| |
|
||||||| | || |||||||| | || ||||||||||| ||||| |
|
|
| T |
4421386 |
gactgttactctttaggggtggtcctctggtacatcttgtactgaa |
4421341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 5100000 - 5100064
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
5100000 |
tggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac |
5100064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 16907062 - 16906992
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccat |
182 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||| || | |||||||| || ||||||||| ||||| |
|
|
| T |
16907062 |
tggttactttgtgtctgaatggtatggaatgaacgtaataacaaaatatttagtaatatccaaaccaccat |
16906992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 475990 - 475917
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattga |
185 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||| || |||||| ||||||| |
|
|
| T |
475990 |
tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattga |
475917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 16906924 - 16906815
Alignment:
| Q |
270 |
gtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgt |
369 |
Q |
| |
|
|||||| |||||| |||||||| ||||||| ||||||| | | ||||||||||||| ||||||| |||| |||||||||| | ||||| ||||| |
|
|
| T |
16906924 |
gtggtcggatcctttgttatgtttgggtattgactgacctttgtcttgtaaatattgtatgactgtgattttctaggggtggccctttggtacaccttgt |
16906825 |
T |
|
| Q |
370 |
gctgaaatgg |
379 |
Q |
| |
|
||| |||||| |
|
|
| T |
16906824 |
gctaaaatgg |
16906815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 53941200 - 53940790
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || | |
|
|
| T |
53941200 |
ttggtgtttctagtgttgactctattgatatctgtgaccatttccttcaattcattcattgtacaggtcactcgaggaagcgcatatcctttcttcagct |
53941101 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53941100 |
gctgtggttactttgtgtatgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaactaccattgattaattattagaaaagattaaa |
53941001 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
53941000 |
ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagttgtggtggtcggaccctatgttatgtctgggtatcgactgac |
53940901 |
T |
|
| Q |
308 |
tgtaa-ttttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattcca |
406 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53940900 |
cgtaatttttgtaaatattgtttgactcttctttttaaggggtggccgtccagtacatcttgtgctgaaatggttccactgcctatgtttatatattcca |
53940801 |
T |
|
| Q |
407 |
ttttgatgttt |
417 |
Q |
| |
|
||||||||||| |
|
|
| T |
53940800 |
ttttgatgttt |
53940790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 34294243 - 34294404
Alignment:
| Q |
214 |
tctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaat |
313 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| | ||||| |||||| ||||||||||||||||| | | |
|
|
| T |
34294243 |
tctttgtggtggttaaaggctaataatgccttgtttgtgcatggcactcagatatggtggtcgaaccctatcttatgtttgggtatcgactgactgaact |
34294342 |
T |
|
| Q |
314 |
tttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaa |
375 |
Q |
| |
|
| |||||||||| |||| ||||||| |||| |||||| || | ||||||||||||| |||| |
|
|
| T |
34294343 |
tgtgtaaatattttttgtctgttctctttatggggtgaccctttagtacatcttgtgttgaa |
34294404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 121 - 369
Target Start/End: Original strand, 34434190 - 34434438
Alignment:
| Q |
121 |
tgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttat |
220 |
Q |
| |
|
||||||||| | |||||||||| ||||| ||||||||||| |||| || ||| || ||| | || ||| | |||||||| |||||| ||||| || | |
|
|
| T |
34434190 |
tgtgtctggatggtttggaatgcgcgtaataatagaatattcaataataaccataccaccttagaacaaattgtagaaaaggttaaatatcattcgttgt |
34434289 |
T |
|
| Q |
221 |
ggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaa |
320 |
Q |
| |
|
||||| | ||||||||||| | ||||||||| ||||||||||| |||||||| | ||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
34434290 |
ggtggcttaaggctaataatgtcaagtttgtgcacgacactcagatgtggtggtcgaaccctttgttatgtttgggtatcgactgactgtagttttgtaa |
34434389 |
T |
|
| Q |
321 |
atattgtttgactgttctttttaaggggtggccttccagtacatcttgt |
369 |
Q |
| |
|
||||||| |||||||| ||| |||||||||| | ||||||||||| |
|
|
| T |
34434390 |
atattgtatgactgttacattttaggggtggccctttggtacatcttgt |
34434438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 20857733 - 20857606
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||| |||||| | | ||||| ||||||||| ||||| || ||| || ||||||| |||||| || |
|
|
| T |
20857733 |
tggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtagaaaaagttaaatacc |
20857634 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| |||||| | |||||||||| |
|
|
| T |
20857633 |
actctttgtggtggctcaaggctaataa |
20857606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 40514069 - 40514196
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||| ||||| ||| | ||||||||||||||||| |||||| | | ||||| ||||||||| ||||| || ||| || ||||||| |||||| | |
|
|
| T |
40514069 |
tggttactatgtgtttggttggtttggaatgaacgtaataatagactctataataatatccaaaccaccatggaacaactagtagaaaaagttaaatatc |
40514168 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| |||||| || |||||||||| |
|
|
| T |
40514169 |
actctttgtggtggctaaaggctaataa |
40514196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 35216264 - 35216377
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
||||||||| |||||||||| || ||||||| |||||||||||||||||||||| || |||||| ||| | || ||| | ||||| || ||||||| | |
|
|
| T |
35216264 |
tggttacttggtgtctgggtggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttagagaaagttaaatttc |
35216363 |
T |
|
| Q |
212 |
attctttatggtgg |
225 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
35216364 |
atttgttatggtgg |
35216377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 31770123 - 31770225
Alignment:
| Q |
205 |
aaattccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgact |
304 |
Q |
| |
|
||||| |||||||| |||||| || | ||||| || || ||||||| |||||||||||| ||||||||| || |||||||| ||| ||||| |||||| |
|
|
| T |
31770123 |
aaatttcattctttgtggtggctaaaagctaaaaacactacgtttgtgtatgacactcagagatggtggtcggaccctatgttgtgtttgggtttcgact |
31770222 |
T |
|
| Q |
305 |
gac |
307 |
Q |
| |
|
||| |
|
|
| T |
31770223 |
gac |
31770225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 20858005 - 20857941
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||| |||||| | | ||||| ||||||||| |
|
|
| T |
20858005 |
tggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaac |
20857941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 31921642 - 31921826
Alignment:
| Q |
41 |
gtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagttgttgtggttactttgtgtctgggtagtttggaa |
140 |
Q |
| |
|
|||||||||| |||| || ||| |||| ||||||||| ||| ||| |||||||||||| || | | |||||||| ||||| ||| | |||||||| |
|
|
| T |
31921642 |
gtgaccattttattcagtttattaattgcacaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaa |
31921741 |
T |
|
| Q |
141 |
tgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtgg |
225 |
Q |
| |
|
|||||| ||||| ||| | ||||||| ||||||||| | ||||| |||| |||||| | ||||| ||||||||||||||| |
|
|
| T |
31921742 |
tgaacgcaacaacagactttttaataatatccaaacatcaattgaaggtttatcagaaaaagtaaaattacattctttatggtgg |
31921826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 31674778 - 31674643
Alignment:
| Q |
41 |
gtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagttgttgtggttactttgtgtctgggtagtttggaa |
140 |
Q |
| |
|
|||||||||| |||| || ||| |||| ||||||||| ||| ||| |||||||||||| || | | |||||||| ||||| ||| | |||||||| |
|
|
| T |
31674778 |
gtgaccattttattcagtttattaattgcacaggtcacacgaaggcgcgtagatcctttcttcagctcatttggttactatgtgtgtggatggtttggaa |
31674679 |
T |
|
| Q |
141 |
tgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||| ||||| ||| | ||||||| ||||||||| |
|
|
| T |
31674678 |
tgaacgcaacaacagactttttaataatatccaaac |
31674643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 25350104 - 25349694
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || | |
|
|
| T |
25350104 |
ttggtatttctagtgttgactcttttgatatctgtgaccatttccttcaattcattcattgtacaggtcactcgaggaagcgcatatcctttcttcagct |
25350005 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25350004 |
gttgtggttactttgtgtctgggtagtttggaataaacgtaacaatagaatatttaataatatccaaactaccattgatcaattattagaaaagattaaa |
25349905 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
25349904 |
ttacattctttatggtggttacatgctaataatgccttgtttgtgcatggcactcagatgtggtggtcggaccctatgttatgtctgggtatcgactgac |
25349805 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
25349804 |
cataattttgtaaatattgtttgactgttctttttaaggggtggcctttcagtacatcttgggctgaaatggttctactgcctatgtttataaatttcat |
25349705 |
T |
|
| Q |
408 |
tttgatgtttt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
25349704 |
tttgatgtttt |
25349694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 319
Target Start/End: Complemental strand, 26513503 - 26513294
Alignment:
| Q |
110 |
tgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaatt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||| | ||| ||||||| || |||||| ||||| | ||||||||||||||||| ||||| |
|
|
| T |
26513503 |
tgtggttactttgtgtctgggtggtttggaatgaccgcaacaacataatttttaataataaccaaaccaccatagcacaattattagaaaagataaaatt |
26513404 |
T |
|
| Q |
210 |
ccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactg |
309 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| |||| |||| | ||| ||||| |||||||| || || ||||||| ||||||||||||||||| | |
|
|
| T |
26513403 |
tcattctttgtggtggttaaaggctaataatgcctcgtttatgcacggcacacagatgtggtggtcggacccaatgttatttctgggtatcgactgaccg |
26513304 |
T |
|
| Q |
310 |
taattttgta |
319 |
Q |
| |
|
|| ||||||| |
|
|
| T |
26513303 |
tacttttgta |
26513294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 2710077 - 2710164
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaa |
199 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| || ||| |||||| | ||||||||| ||||||||||| | ||||||| |
|
|
| T |
2710077 |
tggttactttgtgtttgggtggtttggaatgaacgtaataacagattatttaggaacatccaaactcccattgatcaactgttagaaa |
2710164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 22532294 - 22532181
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||| || |||||| ||||||| ||||||||||| | ||||| | |
|
|
| T |
22532294 |
tggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaacatccattgaaggcttattagaaaaagtaaaattac |
22532195 |
T |
|
| Q |
212 |
attctttatggtgg |
225 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
22532194 |
actctttatggtgg |
22532181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 7014758 - 7014631
Alignment:
| Q |
181 |
attgatcaattattagaaaagattaaattccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatc |
280 |
Q |
| |
|
|||||| | |||||||||||| | |||| |||| |||||||||| || ||||| |||||| |||||||| ||| | |||| | ||||||||||||| |
|
|
| T |
7014758 |
attgattacttattagaaaaggtaaaatatcattttttatggtggctaaaggctcataatattatgtttgtgtatggctctcataattggtggtcagatc |
7014659 |
T |
|
| Q |
281 |
ctatgttatgtctgggtatcgactgact |
308 |
Q |
| |
|
| | | |||| |||||||||||||||| |
|
|
| T |
7014658 |
ttttataatgtttgggtatcgactgact |
7014631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 14687371 - 14687435
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||||||||| | ||| |||||||| |||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
14687371 |
tggttactttgtgttttggtggtttggaacgaacgtaataataggctttttaataatatccaaac |
14687435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 52691417 - 52691008
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || | |
|
|
| T |
52691417 |
ttggtgtttctagtgttaactctattgatatctgtgaccatttccttcaattcattcattgtacaggtcactcgaggaagcgcaaatcctttcttcagct |
52691318 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52691317 |
gctgtgattactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatattcaaactaccattgatcaattattataaaagattaaa |
52691218 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|| ||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
52691217 |
tttcattctttacggtgg-tacaagctaataatgtcttgtttgtgcatgacactcagatgtggtggtcggaccctatgttatgtctgggtatcgactgac |
52691119 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
52691118 |
cgtaattttgtaaatattgtttgacttttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactacctatgtttatatattccat |
52691019 |
T |
|
| Q |
408 |
tttgatgtttt |
418 |
Q |
| |
|
||||||||||| |
|
|
| T |
52691018 |
tttgatgtttt |
52691008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 152 - 381
Target Start/End: Complemental strand, 44762269 - 44762040
Alignment:
| Q |
152 |
atagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacaggctaataataccttgtttgt |
251 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | ||||| |||||||| || |||| || |||| ||||||||| ||||||||||| | |||||||| |
|
|
| T |
44762269 |
atagaatatttaataacatctaaactaccatataacaatttatagaaaaggtttaatttcacgctttgtggtggttaaaggctaataatgcattgtttgt |
44762170 |
T |
|
| Q |
252 |
gcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtgg |
351 |
Q |
| |
|
||||| ||||||||| || ||||| | |||||||||||| ||||||||||||||||| | || ||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
44762169 |
gcatggcactcagatgtgctggtcgaaccctatgttatgtttgggtatcgactgactgaacttgtgtaaatattgtttgtctgttctctttgtggggtga |
44762070 |
T |
|
| Q |
352 |
ccttccagtacatcttgtgctgaaatggtt |
381 |
Q |
| |
|
| | |||||||||||||||||| ||||| |
|
|
| T |
44762069 |
tcctttagtacatcttgtgctgaagtggtt |
44762040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 705749 - 705649
Alignment:
| Q |
318 |
taaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
705749 |
taaatattgtttgactgttctttttaaggggtagcctttcagtacatcttgtgctgaaatagttttactgcctatgtttataaattccattttgatgttt |
705650 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
|
|
| T |
705649 |
t |
705649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 336
Target Start/End: Complemental strand, 50729810 - 50729592
Alignment:
| Q |
118 |
ctttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctt |
217 |
Q |
| |
|
|||||||||||||| || | ||||| ||||| ||||||||||||||| | |||| || ||||| || |||||||||||||| |||||| |||||| | |
|
|
| T |
50729810 |
ctttgtgtctgggtggtgtagaatgcccgtaatgatagaatatttaataatgtccataccaccatagaacaattattagaaaaagttaaataccattcgt |
50729711 |
T |
|
| Q |
218 |
tatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttg |
317 |
Q |
| |
|
| |||||| | ||||| ||||| || | |||||||| | || ||| ||||||| | ||| ||||||||||||||||||||||| |||| | ||| |
|
|
| T |
50729710 |
tgtggtggcttaaggctgataatgccatttttgtgcacggtacgtagacgtggtggttgaaccctttgttatgtctgggtatcgactgaatgtagtcttg |
50729611 |
T |
|
| Q |
318 |
taaatattgtttgactgtt |
336 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
50729610 |
taaatattgtatgactgtt |
50729592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 20986942 - 20986823
Alignment:
| Q |
121 |
tgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttat |
220 |
Q |
| |
|
||||||||||| || || ||||| ||||| | | ||||||||||| | |||| || ||||| |||| ||||||||| |||||||||| | ||||||| | |
|
|
| T |
20986942 |
tgtgtctgggtggtgtgcaatgaccgtaatgacataatatttaataatgtccataccaccatagatcgattattagataagattaaatactattctttgt |
20986843 |
T |
|
| Q |
221 |
ggtggttacaggctaataat |
240 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
20986842 |
ggtggcttaaggctaataat |
20986823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 13868178 - 13868305
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||| ||||| ||| | ||||||||||||||||| |||||| | | ||||| ||||||||| ||||| || ||| || || |||| |||||| | |
|
|
| T |
13868178 |
tggttactatgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtaaaaaaagttaaatatc |
13868277 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| |||||| || | |||||||| |
|
|
| T |
13868278 |
actctttgtggtggctaaaagctaataa |
13868305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 26701077 - 26701135
Alignment:
| Q |
120 |
ttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaacta |
178 |
Q |
| |
|
|||||| ||| || ||||||||||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
26701077 |
ttgtgtgtggataatttggaatgaacgaaataatagaatatttaagaatatccaaacta |
26701135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 33150772 - 33150699
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattga |
185 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||| |||||| | | ||||| |||||||| ||| |||| |
|
|
| T |
33150772 |
tggttactttgtgtttggttggtttggaatgaacgtaataatagactctataataacatccaaaccaccgttga |
33150699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 34824841 - 34824954
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||||| ||||| ||| | ||||||| ||| ||||| ||||||| |||| |||||| | ||||| | |
|
|
| T |
34824841 |
tggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatattcaaacatccattgaaggtttatcagaaaaagtaaaattac |
34824940 |
T |
|
| Q |
212 |
attctttatggtgg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34824941 |
attctttatggtgg |
34824954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 5808533 - 5808493
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaa |
152 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
5808533 |
tggttactttgtgtctggttggtttggaacgaacgtaacaa |
5808493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 26510719 - 26510807
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaa |
200 |
Q |
| |
|
||||||||||||| |||| | || ||||||||||||||||| ||| | ||||| ||||||||| | |||||| ||| || ||||||| |
|
|
| T |
26510719 |
tggttactttgtgcctggtttgtgtggaatgaacgtaacaacagacttcataataatatccaaaccaacattgaacaactagtagaaaa |
26510807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 415
Target Start/End: Complemental strand, 25192970 - 25192563
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
25192970 |
ttggtgtttctagtgttgactctattgatatctgtgacaatttccttcaattcattcattgtacaggtcactcgacgaagcgcagatcctttcttcagct |
25192871 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25192870 |
gttgtggttactttgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaactaccattgatcaattattagacaagattaaa |
25192771 |
T |
|
| Q |
208 |
ttccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||| ||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
25192770 |
ttccattatttatggtggctacaagctaataatgccttgtttgtgcatggcactcagatgtggtggtcgtaccctatgttatgtctgggtatcgactgac |
25192671 |
T |
|
| Q |
308 |
tgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccat |
407 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||| |
|
|
| T |
25192670 |
cgtacttttgtaaatattgtttgactgttgttttttaggggtggccctccagtacatcttgtactgaaacggtttcactgcctatgttaatatattccat |
25192571 |
T |
|
| Q |
408 |
tttgatgt |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
25192570 |
tttgatgt |
25192563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 151 - 415
Target Start/End: Complemental strand, 25879253 - 25878989
Alignment:
| Q |
151 |
aatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacaggctaataataccttgtttg |
250 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
25879253 |
aatagaatatttaataatattcaaactactattgatcaattattagaaaagattaaattcaattctttatggtggttacaggctaataatgtcttctttg |
25879154 |
T |
|
| Q |
251 |
tgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtg |
350 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
25879153 |
tgcatggtactcagatgtggtggtcggaccctatgttatgtatgggtatcgactaaccgtaattttgtaaatattatttgactgttctttttaagaggtg |
25879054 |
T |
|
| Q |
351 |
gccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgt |
415 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25879053 |
gcctttcagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgt |
25878989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 223 - 418
Target Start/End: Original strand, 31639971 - 31640167
Alignment:
| Q |
223 |
tggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaatttt-gtaaa |
321 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
31639971 |
tggttacaggttaataatgccttgtttgtgcatgacactcagttgtggtggtcggaccctatgttatgtctgggtatcgactgaccgtaatttttgtaaa |
31640070 |
T |
|
| Q |
322 |
tattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgtttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31640071 |
tattgtttgactgttctttttaaggggtggccgtccagtacatcttgtgctgaaatggttccactgcctatgtttatatattccattttgatgtttt |
31640167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 39432632 - 39432433
Alignment:
| Q |
8 |
ttggtgtttctagtgttgactctattgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagtt |
107 |
Q |
| |
|
|||||||||| |||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| || | |
|
|
| T |
39432632 |
ttggtgtttcaagtgttgaatctaacgatatcggtgaccatttccttcagttcattcattgtacaggtcactcgaggatgcgcagatcctttcttcagct |
39432533 |
T |
|
| Q |
108 |
gttgtggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaa |
207 |
Q |
| |
|
| |||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39432532 |
gctgtggttactatgtgtctgggtggtttgaaatgaacgcaacaacataatatttaataatatccaaaataccattgatcaattattagaaaagattaaa |
39432433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 197 - 415
Target Start/End: Complemental strand, 39432315 - 39432097
Alignment:
| Q |
197 |
aaaagattaaattccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctggg |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
39432315 |
aaaagattaaactccattctttatggtggctacaagctaataatgtcttgtttgtgcatgatactcagatgtggtcgtcagaccctatgttatgtctggg |
39432216 |
T |
|
| Q |
297 |
tatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgttt |
396 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||| |||| ||||| | ||||||||||||| |||||| |||| |||| || |||| |
|
|
| T |
39432215 |
tatcgactgaccatacttttgtaaatattgtttgactgttctcttttagggatggcccttcagtacatcttgtactgaaaaggtttcactcccactgtta |
39432116 |
T |
|
| Q |
397 |
ataaattccattttgatgt |
415 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
39432115 |
atatgttccattttgatgt |
39432097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 112 - 333
Target Start/End: Original strand, 42579808 - 42580029
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
||||| || ||| ||||||| |||||||||| ||||| ||||||||||||||| |||||||| ||||| || ||| | || ||||| ||||||| |
|
|
| T |
42579808 |
tggttgctatgtttctgggtggtttggaatgctcgtaatgatagaatatttaataacatccaaaccaccatagaacaacttctaaaaaaggttaaatttg |
42579907 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgta |
311 |
Q |
| |
|
|||| || |||||| || ||||||||||| ||| ||||||||||||||||||||| |||||||| | |||||||||||| ||| |||||| |||||||| |
|
|
| T |
42579908 |
attccttgtggtggctaaaggctaataatgcctcgtttgtgcatgacactcagatgtggtggtcgaaccctatgttatgtttggatatcgattgactgta |
42580007 |
T |
|
| Q |
312 |
attttgtaaatattgtttgact |
333 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
42580008 |
cttttataaatattgtttgact |
42580029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 15438946 - 15438751
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
||||||||| |||||| ||| | || |||| |||||||||||||||||||||| || |||||| ||| | |||||| | ||||| || ||||||| | |
|
|
| T |
15438946 |
tggttacttggtgtctaggtgatctgaaatgctcgtaacaatagaatatttaataatacccaaacaaccgtagatcaacttttagagaaagttaaatttc |
15438847 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|||| | |||||| | |||||||||| ||| |||||| | || ||| ||| ||||||||| || |||||| | ||| ||||||||||||||| |
|
|
| T |
15438846 |
attcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtttgggtatcgactgac |
15438751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 15530250 - 15530055
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
||||||||| |||||| ||| | || |||| |||||||||||||||||||||| || |||||| ||| | |||||| | ||||| || ||||||| | |
|
|
| T |
15530250 |
tggttacttggtgtctaggtgatctgaaatgctcgtaacaatagaatatttaataatacccaaacaaccgtagatcaacttttagagaaagttaaatttc |
15530151 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgac |
307 |
Q |
| |
|
|||| | |||||| | |||||||||| ||| |||||| | || ||| ||| ||||||||| || |||||| | ||| ||||||||||||||| |
|
|
| T |
15530150 |
attcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtttgggtatcgactgac |
15530055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 25900811 - 25900714
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaatt |
209 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||| ||| | ||||| ||||||| | | |||||| ||| || |||||||| ||||||| |
|
|
| T |
25900811 |
tggttactttgtgcctggttggtttggaatgaacgtaacaacagacttcataataatatccaatccaacattgaacaactagtagaaaaggttaaatt |
25900714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 6985104 - 6985174
Alignment:
| Q |
115 |
ttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattga |
185 |
Q |
| |
|
||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||| ||||||||| ||||||| |
|
|
| T |
6985104 |
ttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatatccaaacatccattga |
6985174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 36698857 - 36698939
Alignment:
| Q |
181 |
attgatcaattattagaaaagattaaattccattctttatggtggttacaggctaataataccttgtttgtgcatgacactca |
263 |
Q |
| |
|
|||||| | ||||||||||||| |||| ||||||||||||||| || ||||| ||||||| |||||||| ||||| |||| |
|
|
| T |
36698857 |
attgataacttattagaaaagacaaaatatcattctttatggtggctaaaggctcataatactatgtttgtgtatgactctca |
36698939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 26658745 - 26658697
Alignment:
| Q |
118 |
ctttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaata |
166 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
26658745 |
ctttgtgtttggttagtgtggaatgaacgtaataatagactatttaata |
26658697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 115 - 418
Target Start/End: Complemental strand, 19914459 - 19914156
Alignment:
| Q |
115 |
ttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccatt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19914459 |
ttacttagtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccatt |
19914360 |
T |
|
| Q |
215 |
ctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaatt |
314 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
19914359 |
ctttatggtggttacaggttaataatgccttgtttgtgcatgacactcagatgtggtggtcggatcttatgttatgactgagtatcgactgactgtaatt |
19914260 |
T |
|
| Q |
315 |
ttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatg |
414 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19914259 |
ttgtaaatattgtttgacagttctttttaaggggtggtcttccagaacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatg |
19914160 |
T |
|
| Q |
415 |
tttt |
418 |
Q |
| |
|
|||| |
|
|
| T |
19914159 |
tttt |
19914156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 189 - 418
Target Start/End: Complemental strand, 35552983 - 35552754
Alignment:
| Q |
189 |
attattagaaaagattaaattccattctttatggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgtta |
288 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| || ||||||||| |
|
|
| T |
35552983 |
attatttgaaaagattaaattccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagatgtggtggtcggaccctatgtta |
35552884 |
T |
|
| Q |
289 |
tgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35552883 |
tgtctgggtatcgactgactgtaattttgtaaatattgttttactattctttttaaggggttgccttccaatacatcttgtgctgaaatggttccactgc |
35552784 |
T |
|
| Q |
389 |
ctatgtttataaattccattttgatgtttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35552783 |
ctatgtttataaattccattttgatgtttt |
35552754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 334
Target Start/End: Complemental strand, 44433169 - 44432971
Alignment:
| Q |
136 |
tggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacaggcta |
235 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| | |||| || ||||| | |||||||||||||||||||||| |||||| || || ||| | |||||| |
|
|
| T |
44433169 |
tggaatgaccgtaatgaaagaatatttaataatgtccataccaccatataacaattattagaaaagattaaataccattcattgtgatggcttaaggcta |
44433070 |
T |
|
| Q |
236 |
ataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactg |
334 |
Q |
| |
|
||||| || | |||||||||| || |||| |||||||| ||||| |||| ||| |||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
44433069 |
ataatgccatttttgtgcatggtacgcagacttggtggtcgaatcctctgttttgtttgggtatcgactatttgtaatcttgtaaatattgtatgactg |
44432971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 38488841 - 38488968
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||| |||||| | | ||||| ||||||||| ||||| || || || ||||||| |||||| | |
|
|
| T |
38488841 |
tggttactttgtgtttggctggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacagctagtagaaaaagttaaatatc |
38488940 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| ||||||||| |||||||||| |
|
|
| T |
38488941 |
actctttgtggtggttaaaggctaataa |
38488968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 336
Target Start/End: Complemental strand, 20348732 - 20348517
Alignment:
| Q |
121 |
tgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttat |
220 |
Q |
| |
|
||||||||||| || ||||||| ||||| | | ||||||||| | | |||| || ||||| |||| ||||||||| ||||| |||| | ||||||| | |
|
|
| T |
20348732 |
tgtgtctgggtggtgcggaatgaccgtaatgacataatatttaaaaatgtccataccaccatagatcgattattagataagatcaaatactattctttgt |
20348633 |
T |
|
| Q |
221 |
ggtggttacaggctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaa |
320 |
Q |
| |
|
||||| | ||||||||||| || |||||||| | || ||| |||||||| | |||||||| || ||||| |||||||| |||||| |||||| |
|
|
| T |
20348632 |
ggtggcttaaggctaataatgcccattttgtgcacggtacgcaggcttggtggtcgaaccctatgttttgcctgggaatcgactgcttgtaatcttgtaa |
20348533 |
T |
|
| Q |
321 |
atattgtttgactgtt |
336 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
20348532 |
atattgtatgactgtt |
20348517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 26855490 - 26855426
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
26855490 |
tggttactttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaac |
26855426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 35213410 - 35213283
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||| ||||| ||| | ||||||||||||||||| |||| | | | || || ||||||||| ||||| || || || ||||||| |||||| | |
|
|
| T |
35213410 |
tggttactctgtgtttggttggtttggaatgaacgtaataatatactttatactaatatccaaacaaccatggaacagctagtagaaaaagttaaatatc |
35213311 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| ||||||||| |||||||||| |
|
|
| T |
35213310 |
actctttgtggtggttaaaggctaataa |
35213283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 34103256 - 34103186
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccat |
182 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||| || | ||||||||| ||||||||| ||||| |
|
|
| T |
34103256 |
tggttacttagtgtctgggttgtttggaatgaacataataacatggtatttaataatatccaaaccaccat |
34103186 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 242 - 418
Target Start/End: Complemental strand, 55479888 - 55479711
Alignment:
| Q |
242 |
ccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaatttt-gtaaatattgtttgactgttcttt |
340 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
55479888 |
ccttgtttgtgcatgacactcagttgtggtggtcggaccctatgttatgtctgggtatcgactgaccgtaatttttgtaaatattgtttgactgttcttt |
55479789 |
T |
|
| Q |
341 |
ttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgtttt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55479788 |
ttaaggggtggctgtccagtacatcttgtgctgaaatggttccactgcctatgtttatatattccattttgatgtttt |
55479711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 32384873 - 32385006
Alignment:
| Q |
285 |
gttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttcca |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32384873 |
gttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttacggggtggccttccagtacatcttatgctgaaatggttcca |
32384972 |
T |
|
| Q |
385 |
ctgcctatgtttataaattccattttgatgtttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32384973 |
ctgcctatgtttataaattccattttgatgtttt |
32385006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 33 - 415
Target Start/End: Complemental strand, 19119933 - 19119551
Alignment:
| Q |
33 |
tgatatttgtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagttgttgtggttactttgtgtctgggta |
132 |
Q |
| |
|
|||||| ||||| |||||| |||| |||||||||| |||| | ||||| || | ||| |||||||| ||| || | | |||||||||||||||||| | |
|
|
| T |
19119933 |
tgatatatgtgagcatttctttcagttcattcattatacatggcactcaaggatgcggagatccttccttcagctcgtttggttactttgtgtctggatg |
19119834 |
T |
|
| Q |
133 |
gtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattccattctttatggtggttacagg |
232 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| ||||||| | ||||| || ||| | ||| |||| ||||||| ||||| ||||||||| | | | |
|
|
| T |
19119833 |
gtttggaatgaacgtaataacaaaatatttaataatatccaagccaccatagaacaactcttataaaaagttaaatttcattcgttatggtggcttaaag |
19119734 |
T |
|
| Q |
233 |
ctaataataccttgtttgtgcatgacactcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgac |
332 |
Q |
| |
|
|||||||| | ||||||||| |||||| ||| ||||||||||| | | |||||||||||||||||||||||| || ||| |||||||||| |||| |
|
|
| T |
19119733 |
ctaataatgtcaagtttgtgcacgacacttagagttggtggtcagaccttttgttatgtctgggtatcgactgaccgttgtttagtaaatattgcatgac |
19119634 |
T |
|
| Q |
333 |
tgttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactgcctatgtttataaattccattttgatgt |
415 |
Q |
| |
|
|||||| ||| ||| || || | ||||| ||||| ||||| ||| ||||| ||| ||||| ||| ||| |||||| |||| |
|
|
| T |
19119633 |
tgttctcttttaggaatgaccctttggtacaccttgtactgaagtggatccacggccgatgttaatatatttcatttttatgt |
19119551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 415
Target Start/End: Original strand, 9321795 - 9321941
Alignment:
| Q |
269 |
ggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttg |
368 |
Q |
| |
|
||||||| || |||||||||||| || |||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| | | |||||||||||| |
|
|
| T |
9321795 |
ggtggtcggaccctatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactgttcccttttaggggtggtccttcagtacatcttg |
9321894 |
T |
|
| Q |
369 |
tgctgaaatggttccactgcctatgtttataaattccattttgatgt |
415 |
Q |
| |
|
| |||||| |||| ||||| | |||| ||| ||||||||||||||| |
|
|
| T |
9321895 |
tactgaaaaggtttcactgtcagtgttaatatattccattttgatgt |
9321941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 415
Target Start/End: Original strand, 9376274 - 9376420
Alignment:
| Q |
269 |
ggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttaaggggtggccttccagtacatcttg |
368 |
Q |
| |
|
||||||| || |||||||||||| || |||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| | | |||||||||||| |
|
|
| T |
9376274 |
ggtggtcggaccctatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactgttcccttttaggggtggtccttcagtacatcttg |
9376373 |
T |
|
| Q |
369 |
tgctgaaatggttccactgcctatgtttataaattccattttgatgt |
415 |
Q |
| |
|
| |||||| |||| ||||| | |||| ||| ||||||||||||||| |
|
|
| T |
9376374 |
tactgaaaaggtttcactgtcagtgttaatatattccattttgatgt |
9376420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 20543862 - 20543749
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||| ||||||||| || |||| ||| || ||| || ||| ||| | |
|
|
| T |
20543862 |
tggttactttgtgtttgggtggtttggaatgaacgtaataatagactttttaataatatccaaaccacggttgaacaactagcagataaagttagatttc |
20543763 |
T |
|
| Q |
212 |
attctttatggtgg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20543762 |
attctttatggtgg |
20543749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 43517093 - 43517220
Alignment:
| Q |
112 |
tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaatagtatccaaactaccattgatcaattattagaaaagattaaattcc |
211 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||| |||||| | | ||||| ||||||||| ||||| || | || ||||||| |||||| | |
|
|
| T |
43517093 |
tggttactttgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacggctagtagaaaaagttaaatatc |
43517192 |
T |
|
| Q |
212 |
attctttatggtggttacaggctaataa |
239 |
Q |
| |
|
| ||||| |||||| || |||||||||| |
|
|
| T |
43517193 |
actctttgtggtggctaaaggctaataa |
43517220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 34104967 - 34104903
Alignment:
| Q |
260 |
ctcagatatggtggtcagatcctatgttatgtctgggtatcgactgactgtaattttgtaaatat |
324 |
Q |
| |
|
|||||| ||||||||| || ||| |||||||| ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
34104967 |
ctcagagatggtggtcggaccctttgttatgtttgggtatcgactgaccgtatttttgtacatat |
34104903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 21393766 - 21393814
Alignment:
| Q |
118 |
ctttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaata |
166 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
21393766 |
ctttgtgtttggctagtgtggaatgaacgtaataatagactatttaata |
21393814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 7516 - 7381
Alignment:
| Q |
41 |
gtgaccatttccttcaattcattcattgtacaggtcactcgagaaagcgcagatcctttcttaagttgttgtggttactttgtgtctgggtagtttggaa |
140 |
Q |
| |
|
|||||||||| |||| || ||| |||||||||||||| | | | ||| ||||||||| || || | | |||||||| ||||| ||| | |||||||| |
|
|
| T |
7516 |
gtgaccattttattcagtttattaattgtacaggtcacacaaagacgcgtagatcctttattcagctcatttggttactatgtgtgtggatggtttggaa |
7417 |
T |
|
| Q |
141 |
tgaacgtaacaatagaatatttaatagtatccaaac |
176 |
Q |
| |
|
|||||| ||||| ||| | ||||||| ||||||||| |
|
|
| T |
7416 |
tgaacgcaacaacagactttttaataatatccaaac |
7381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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