View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8704_low_6 (Length: 227)
Name: NF8704_low_6
Description: NF8704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8704_low_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33733012 - 33732787
Alignment:
| Q |
1 |
aagagctagttaaactaagaagagtgatactatagcacaacactaatagtgcattctattgtttccatcaaaacacaagaccttaaagatggtaagagct |
100 |
Q |
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| T |
33733012 |
aagagctagttaaactaagaagagtgatactatagcatat-actaatagtgcattctattgtttccatcaaaacacaagaccttaaagatggtaagagct |
33732914 |
T |
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| Q |
101 |
ccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatggccatggcaattggc |
200 |
Q |
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| T |
33732913 |
ccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatggccatggcaattggc |
33732814 |
T |
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| Q |
201 |
gtgccctcccaaagcttgcaggtactt |
227 |
Q |
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| T |
33732813 |
gtgccctcccaaagcttgcaggtactt |
33732787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 16139285 - 16139147
Alignment:
| Q |
86 |
aagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatg |
185 |
Q |
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|||||||| || ||||||||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||| ||||| |||||| | ||||||| |
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| T |
16139285 |
aagatggttagggctccttgttgtgaaaagaaaggattgaagaaaggtccttggaccttagaggaagatgaaatcctcacatcatacatcaataaacatg |
16139186 |
T |
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| Q |
186 |
gccatggcaattggcgtgccctcccaaagcttgcaggta |
224 |
Q |
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| T |
16139185 |
gacatagcaattggcgtgccctaccaaaacatgcaggta |
16139147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 16128231 - 16128104
Alignment:
| Q |
86 |
aagatggtaagagctccttgttgtgaaaagatgggattgaagaggggtccttggtctcttgaggaagatgaaatccttacatcttacatccaaaaacatg |
185 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||| ||||| |||||| | ||||||| |
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| T |
16128231 |
aagatggttagagctccatgttgtgaaaagaaaggattgaagaaaggtccttggaccttagaggaagatgaaatcctcacatcctacatcaacaaacatg |
16128132 |
T |
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| Q |
186 |
gccatggcaattggcgtgccctcccaaa |
213 |
Q |
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| T |
16128131 |
gacatagcaattggcgtgctctcccaaa |
16128104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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