View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8705_high_10 (Length: 214)
Name: NF8705_high_10
Description: NF8705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8705_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 34995733 - 34995555
Alignment:
| Q |
18 |
ctaactttatcatttgaatgattgtgcactccattaagaatactaaatgaccggtcattaaattttgacaaataataattacgcaatctaaattgacatt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34995733 |
ctaactttatccattgaatgattgtgcactccattaagaatactagatgatcggtcattaaattttgacaaataat---tacgcaatctaaattgacatt |
34995637 |
T |
|
| Q |
118 |
cacgtttcctttaacacatgtcttctcgatttaatttcttcttagttcctctgtacataccatctctttcacaatccaacac |
199 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34995636 |
cacgtttcctttagcacgtgtcttctcgatttaattttttcttagttcctctgtacataccatctctttcacaatccaacac |
34995555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University