View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8705_high_3 (Length: 385)
Name: NF8705_high_3
Description: NF8705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8705_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 1586573 - 1586769
Alignment:
| Q |
188 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586573 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1586672 |
T |
|
| Q |
288 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586673 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat |
1586769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 188 - 373
Target Start/End: Original strand, 1580463 - 1580648
Alignment:
| Q |
188 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580463 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1580562 |
T |
|
| Q |
288 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
373 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1580563 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1580648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 188 - 373
Target Start/End: Complemental strand, 1604352 - 1604167
Alignment:
| Q |
188 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604352 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1604253 |
T |
|
| Q |
288 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
373 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1604252 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1604167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 1586427 - 1586488
Alignment:
| Q |
37 |
tataaatacactgactcgataacaagacaagttaaagaagccacacacattctcaactcagcacaac |
103 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586427 |
tataaatacacagactcgataacaa-----gttaaagaagccacacacattctcaactcagcacaac |
1586488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 1580334 - 1580374
Alignment:
| Q |
63 |
acaagttaaagaagccacacacattctcaactcagcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580334 |
acaagttaaagaagccacacacattctcaactcagcacaac |
1580374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 1604481 - 1604441
Alignment:
| Q |
63 |
acaagttaaagaagccacacacattctcaactcagcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604481 |
acaagttaaagaagccacacacattctcaactcagcacaac |
1604441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University