View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8705_low_1 (Length: 551)
Name: NF8705_low_1
Description: NF8705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8705_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 192 - 474
Target Start/End: Original strand, 2491100 - 2491385
Alignment:
| Q |
192 |
attaggtggatcttatcatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
291 |
Q |
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| T |
2491100 |
attaggtggatcttattatgccatgttgcttttaagatttcaatcacattttaatctaatagtgcaactcccgcgactctatcattttttactccaagcg |
2491199 |
T |
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| Q |
292 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
391 |
Q |
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| T |
2491200 |
ttgagatttgatggagtaaatccatatttttacatttaagcaaaggttctttatgcaaaggcagctttaaacaatcatgtctaccacataaacatgttcc |
2491299 |
T |
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| Q |
392 |
aatggcgaaacacaacaaataacagttagtt---aagcttaaaaacacagaaattcccaatgggaattgctcttagcattttatgt |
474 |
Q |
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| T |
2491300 |
aatggcgaaacacaacaaataacagttagttaagaagcttaaaaacacagaaactcccaatgggaattgctcttagcattttatgt |
2491385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 2490917 - 2491069
Alignment:
| Q |
19 |
attacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattatagtaatccg |
118 |
Q |
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| T |
2490917 |
attacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggtaagattactttataaccggaaaagcagtattttattatagtaatccg |
2491016 |
T |
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| Q |
119 |
gtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
171 |
Q |
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| T |
2491017 |
gtagaattctttttctttaatctgcatttgagcctctctaatgatatgattaa |
2491069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 469 - 538
Target Start/End: Original strand, 2491435 - 2491504
Alignment:
| Q |
469 |
ttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagcaccttgtaacacaggtt |
538 |
Q |
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| T |
2491435 |
ttatgtttcttttgcatctgatatgtatgtagaatatattgcttaatgtaagcaccttgtaacacaggtt |
2491504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 2491066 - 2491096
Alignment:
| Q |
135 |
ttaatctgcatttgagcctctctaatgatat |
165 |
Q |
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| T |
2491066 |
ttaatctgcatttgagcctctctaatgatat |
2491096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 41589210 - 41589158
Alignment:
| Q |
19 |
attacccttaggcctttgaatatgcaggacttcaaaatggcaaagagtcaggt |
71 |
Q |
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| T |
41589210 |
attacccttaggccattgaatatgcaggatttcaaagaggccaagaatcaggt |
41589158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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