View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8705_low_2 (Length: 490)
Name: NF8705_low_2
Description: NF8705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8705_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 35797646 - 35798114
Alignment:
| Q |
1 |
caggacgtggatctccggtttctcgagtttactttcaggattcttcgatccgtaacaactacttagatcaaggtttggtggtctgcttcgtcattcttct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35797646 |
caggacatggatctccggtttctcgagtctactttcaggattcttcgatccgtaacaactacttagatcagggtttggtggtctgcttcgtcattcttcc |
35797745 |
T |
|
| Q |
101 |
gagatgtggatctcgggtttcctgaggctacttttggaatttttcgattcgtaacaactaattagagcagggtttggtagtctgcttcgtcattctttcg |
200 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35797746 |
gagatgtggatctcggatttcttgaggccacttttgggatttttcgattcgtaacaactaattagagcagagtttgatagtctgcttcgtcattctttcg |
35797845 |
T |
|
| Q |
201 |
ggacgtggacctcaagtttctcgagggtactttctgaatcctctgattttcttcatgcaatattgcttgttatgggcttttgttggctaggtagctgaat |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35797846 |
ggacgtggacctcaggtttctcgagggtactttctggatcctctgattttcttcatgcaata-----cattatgggcttttgttggctaggtagctgaat |
35797940 |
T |
|
| Q |
301 |
caccatgatattgcttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35797941 |
caccatgatattgcttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaaca |
35798040 |
T |
|
| Q |
401 |
tcaaaatctccttcatcaagattgccatgtttgcattgttcacatgtttcgataagaaaatagatgtgcacact |
474 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35798041 |
tcaaaatctccttcatcaagattgctatgtttgcattgttcacatgtttcgataagaaaatagatgtgcacact |
35798114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 35797593 - 35797743
Alignment:
| Q |
47 |
gatccgtaacaactacttagatcaaggtttggtggtctgcttcgtcattcttctgagatgtggatctcgggtttcctgaggctacttttggaatttttcg |
146 |
Q |
| |
|
||||| ||||||||| ||||| || |||||||||||||||||||||||||||| || |||||||| |||||| ||| ||||||| | ||| |||| |
|
|
| T |
35797593 |
gatccataacaactaattagagcagggtttggtggtctgcttcgtcattcttccaggacatggatctccggtttctcgagtctactttcaggattcttcg |
35797692 |
T |
|
| Q |
147 |
attcgtaacaactaattagagcagggtttggtagtctgcttcgtcattctt |
197 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
35797693 |
atccgtaacaactacttagatcagggtttggtggtctgcttcgtcattctt |
35797743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 35797599 - 35797681
Alignment:
| Q |
152 |
taacaactaattagagcagggtttggtagtctgcttcgtcattctttcgggacgtggacctcaagtttctcgagggtactttc |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| | |||| |||| ||| |||||||||| ||||||| |
|
|
| T |
35797599 |
taacaactaattagagcagggtttggtggtctgcttcgtcattcttccaggacatggatctccggtttctcgagtctactttc |
35797681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 437
Target Start/End: Original strand, 33256571 - 33256694
Alignment:
| Q |
315 |
ttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctcctt |
413 |
Q |
| |
|
||||| ||| ||||||||| ||| | |||||||||| |||||||||||| ||| |||||||| ||| |||| |||||||| |||||||| | | ||| |
|
|
| T |
33256571 |
ttgtttcacttattctctttattgttttgatatcctccaagttcaaacatgaaggtttcacaactatttcactttgatccaagacatcaaagacattctt |
33256670 |
T |
|
| Q |
414 |
catcaagattgccatgtttgcatt |
437 |
Q |
| |
|
||||||||||| |||||| ||||| |
|
|
| T |
33256671 |
catcaagattgacatgttcgcatt |
33256694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 12299999 - 12300081
Alignment:
| Q |
314 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaa |
396 |
Q |
| |
|
|||||| |||| ||| |||||||| |||||||||||| || ||||||||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
12299999 |
cttgttacacagattttcttcattgtgttgatatcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaa |
12300081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 445
Target Start/End: Complemental strand, 52443518 - 52443386
Alignment:
| Q |
314 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctcct |
412 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| ||| || || ||| ||||||||||| |||||||| |||| ||||| || |||||||| | ||||| |
|
|
| T |
52443518 |
cttgttacacataatctcttcactatgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatcaaagacctcct |
52443419 |
T |
|
| Q |
413 |
tcatcaagattgccatgtttgcattgttcacat |
445 |
Q |
| |
|
|||||| || | |||||| ||||||||||| |
|
|
| T |
52443418 |
ccatcaaaatcgacatgttcatattgttcacat |
52443386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 34117174 - 34117075
Alignment:
| Q |
326 |
attctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctccttcatcaagattg |
424 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||| |||| ||||||||||||| ||| ||||| || |||||||| |||| ||||| |||||||| |
|
|
| T |
34117174 |
attctcttcattatgttgatatactacatgatcaaatgtcaaggtttcacaaatatgctactttgatcaaagacatcaaagatcttcttcaccaagattg |
34117075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 34144204 - 34144094
Alignment:
| Q |
315 |
ttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctcctt |
413 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| | ||| | ||||| |||| ||||||||||||| ||| ||||| || |||||||| |||| ||| |
|
|
| T |
34144204 |
ttgtttcacagattctcttcattatgttgatataccacatgatcaaatgtcaaggtttcacaaatatgctactttgatcaaagacatcaaagatcttctt |
34144105 |
T |
|
| Q |
414 |
catcaagattg |
424 |
Q |
| |
|
|| |||||||| |
|
|
| T |
34144104 |
caccaagattg |
34144094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 34156820 - 34156710
Alignment:
| Q |
315 |
ttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatcaaa-atctcctt |
413 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| | ||| | ||||| |||| ||||||||||||| ||| ||||| || |||||||| |||| ||| |
|
|
| T |
34156820 |
ttgtttcacagattctcttcattatgttgatataccacatgatcaaatgtcaaggtttcacaaatatgctactttgatcaaagacatcaaagatcttctt |
34156721 |
T |
|
| Q |
414 |
catcaagattg |
424 |
Q |
| |
|
|| |||||||| |
|
|
| T |
34156720 |
caccaagattg |
34156710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University