View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8705_low_9 (Length: 250)
Name: NF8705_low_9
Description: NF8705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8705_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 7332095 - 7332320
Alignment:
| Q |
17 |
atatatgcaacattaatgtatgataatttgataagtgtaatttagtgttaaaaattgttgttttataaccaaatgtggattctttttcac----aatttt |
112 |
Q |
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| T |
7332095 |
atatatgcaacattaatgtatgataatttgataagtgtaatttattgttaaaaattgttgttttataaccaaatgtggattctttttcacaattaatttt |
7332194 |
T |
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| Q |
113 |
ctttccgtgcgttgcacaaaattaatattgcacttctcaaataggataacattttttgtgaagtttctgatttgaaattcaataacattaataataaatt |
212 |
Q |
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| T |
7332195 |
cttttcgtgcgttgcacataattaatattgcactgcccaaataggataatattttttgtaaagtttctgatttgaaattcaataacattaataataaatt |
7332294 |
T |
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| Q |
213 |
ccaacaacactgttagattttgttctt |
239 |
Q |
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| T |
7332295 |
caaacaacac-gttagattttgttctt |
7332320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 7309619 - 7309522
Alignment:
| Q |
84 |
accaaatgtggattctttttcacaattttctttccgtgcgttgcacaaaattaatattgcacttctcaaataggataacattttttgtgaagtttctga |
182 |
Q |
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| T |
7309619 |
accaaatgtggattctttt-cacaaatttctttccgtgcgttgcacaaaattaatatcacactgctcaaataggataatattttttgtaaagtttctga |
7309522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 7309713 - 7309654
Alignment:
| Q |
19 |
atatgcaacattaatgtatgataatttgataagtgtaatttagtgttaaaaattgttgtt |
78 |
Q |
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| T |
7309713 |
atatgcaacattaatgtatgatagtttgataagtgtaatttattgttaaaaattgttgtt |
7309654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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