View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8706_low_1 (Length: 456)
Name: NF8706_low_1
Description: NF8706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8706_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 151 - 440
Target Start/End: Original strand, 18079176 - 18079465
Alignment:
| Q |
151 |
gggaaagtggtaaaaaagttaagaatgatgagaatgaactgatcagtgaaaagaattcggaaagtgatgttttatctgatgatagtaaaggttattcttt |
250 |
Q |
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| T |
18079176 |
gggaaaatggtaaaaaagttaagaatgatgagaatgaactgatcagtgaaaagaattcggagagtgatgttttatctgatgatagtaaaggttattcttt |
18079275 |
T |
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| Q |
251 |
aaggactgatagaaaagtgaagctaaaagcattgaacagccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcatt |
350 |
Q |
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| T |
18079276 |
aaggactgatagaaaagtgaagctaaaagcattgaacagccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcatt |
18079375 |
T |
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| Q |
351 |
atatttcgattatgtgtttgtgtgcgcgcgcatgtatatatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctc |
440 |
Q |
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| T |
18079376 |
atatttcaattatgtgtttgtgtgcgcgcgcatgtatatatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctc |
18079465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 51478987 - 51479401
Alignment:
| Q |
18 |
ataattgaggtttctaatgagaatgatgaagctgaacaagaggaggagaatgtgaaaacagagaagaagaaacgtggtagaaaaaggaaggtaagttata |
117 |
Q |
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| T |
51478987 |
ataatcgaggtttctgatgagaatgatgaagctgaacgagaggaggagaatgcaaagacagagaagaagaaacctggtagaaaaagtaaggtaagttata |
51479086 |
T |
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| Q |
118 |
gttctgaagaaagtgatgaagatgaacaagagggggaaagtggtaaaaaagttaagaatgatgagaatgaactgatcagtgaaaagaattcggaaagtga |
217 |
Q |
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| T |
51479087 |
gttctgaagaaaatgacgaagatgaacaagagggagataatggtaaaaaagttaagattgatgagaatgaactgatcagtgaaaagaatttggaaagtaa |
51479186 |
T |
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| Q |
218 |
tgttttatctgatgatagtaaaggttattctttaaggactgatagaaaagtg-aagctaaaagcattgaacagccgaagcaaaaaataaacatgcggaat |
316 |
Q |
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| T |
51479187 |
tgttttatctgatgataataaaggttattctttaaggacctttaaaaaagtgaaagctaaaagcattgaacagctgaagcaaaaaattaacaaacggaat |
51479286 |
T |
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| Q |
317 |
ccaaaggtgacatcacatgatctctttgctcattatatttcgattatgtgtttgtgtgcgcgcgcatgtatatatgtttgaatttggtattacatgtgtt |
416 |
Q |
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| T |
51479287 |
cctaaggtgacatcacatgatctctttgctcattatatttcaattctgtgtgtatgt------atacatatatatgtttgaatttggcgttacatgtgtt |
51479380 |
T |
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| Q |
417 |
tacgtaattgaggttctgttt |
437 |
Q |
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| T |
51479381 |
tacgtaattgcggttctgttt |
51479401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 51496022 - 51496194
Alignment:
| Q |
81 |
aagaagaaacgtggtagaaaaaggaaggtaagttatagttctgaagaaagtgatgaagatgaacaagagggggaaagtggtaaaaaagttaagaatgatg |
180 |
Q |
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| T |
51496022 |
aagaagaaacctggtagaaaaaagaaggtaagttatagttctgaagaaaatgacgaagatgaacaagatggggaaaatggtagaaatgttaagattgagg |
51496121 |
T |
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| Q |
181 |
agaatgaactgatcagtgaaaagaattcggaaagtgatgttttatctgatgatagtaaaggttattctttaag |
253 |
Q |
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| T |
51496122 |
agaatgaactgatcagtgaaaagaattcagagagtggtgttttatctgatgataataaaggctattctttaag |
51496194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 51495914 - 51495956
Alignment:
| Q |
66 |
aatgtgaaaacagagaagaagaaacgtggtagaaaaaggaagg |
108 |
Q |
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| T |
51495914 |
aatgtgaaaacagagaagaagaaacctggtaggaaaaggaagg |
51495956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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