View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8707_high_1 (Length: 456)
Name: NF8707_high_1
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 219 - 440
Target Start/End: Complemental strand, 7128131 - 7127910
Alignment:
| Q |
219 |
gaactagctcacttaacatattaattcaccttatagcttacgtctaggttttatttggaagttaggcggggagggaaggaagggctttgaaggggaaaat |
318 |
Q |
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| T |
7128131 |
gaactagctcacttaacatattaattcaccttatagcttacgtctaggttttatttggaagttaggcggggagggaaggaagggctttgaaggggaaaat |
7128032 |
T |
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| Q |
319 |
agagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaagtggttgttggatagtgaaactttatgtattgcagaattgg |
418 |
Q |
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| T |
7128031 |
agagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaagtggttgttggatagtgaaactttatgtattgcagaattgg |
7127932 |
T |
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| Q |
419 |
ttgacaatattccgattgagtg |
440 |
Q |
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| T |
7127931 |
ttgacaatattccgattgagtg |
7127910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 7128353 - 7128164
Alignment:
| Q |
23 |
atttagaaattcaagcatgatata---gacatatctagcacttaaattcaaccaacacccatccttgatcaatcacaacatcaaaattcacccaacatcc |
119 |
Q |
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| T |
7128353 |
atttagaaattcaagcatgatataatagacatatctagcacttaaattcaaccaacacccatccttgatcaatcacaacatcaaaattcacccaacat-c |
7128255 |
T |
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| Q |
120 |
cattcttgctcaagcacaacaccaagaatgcatctcaacccaccttgatgaagtagtgaaaacatcttctttcaaaggcagcaataaatacaac |
213 |
Q |
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| T |
7128254 |
cattcttgctcaagcacaacaccaataatgcatctcaacccaccttgatga---agtgaaaacatcttctttcaaaggcagcaataaatacaac |
7128164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 440
Target Start/End: Complemental strand, 7133303 - 7133175
Alignment:
| Q |
312 |
ggaaaatagagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaagtggttgttgga-tagtgaaactttatgtattgc |
410 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||| |||| ||| ||| ||||| |||||||| |||||||||||| |
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| T |
7133303 |
ggaaaatagagagaaatctttcatcttatttgtctattggtgatggtttaaatgctaacgcttggagtagtttttggagtagtgaaa-tttatgtattgc |
7133205 |
T |
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| Q |
411 |
agaattggttgacaatattccgattgagtg |
440 |
Q |
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| T |
7133204 |
agaagtggttgacaatattctgattgagtg |
7133175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 7133585 - 7133490
Alignment:
| Q |
118 |
cccattcttgctcaagcacaacaccaagaatgcatctcaa-------cccaccttgatgaagtagtgaaaacatcttctttcaaaggcagcaataaatac |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||| ||||||| |
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| T |
7133585 |
cccattcttgctcaagcacaaca---agaatgcatctcaattctcaacccaccttgatca---tgtgaaaacatcttctgtcaaaggcagcagtaaatac |
7133492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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