View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8707_low_1 (Length: 527)

Name: NF8707_low_1
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8707_low_1
NF8707_low_1
[»] chr1 (18 HSPs)
chr1 (387-429)||(42843376-42843418)
chr1 (382-428)||(4213070-4213116)
chr1 (382-431)||(11947790-11947839)
chr1 (384-429)||(18639733-18639778)
chr1 (386-431)||(26585204-26585249)
chr1 (382-426)||(47642634-47642678)
chr1 (388-430)||(23554747-23554789)
chr1 (386-428)||(29706734-29706776)
chr1 (382-432)||(45863748-45863798)
chr1 (382-428)||(48983695-48983741)
chr1 (382-427)||(9566988-9567033)
chr1 (386-423)||(25672344-25672381)
chr1 (387-428)||(27352628-27352669)
chr1 (389-430)||(29489393-29489434)
chr1 (385-426)||(45333356-45333397)
chr1 (382-426)||(19947768-19947812)
chr1 (382-422)||(41619060-41619100)
chr1 (382-426)||(49020431-49020475)
[»] chr5 (17 HSPs)
chr5 (384-428)||(19844338-19844382)
chr5 (382-427)||(17097829-17097874)
chr5 (384-431)||(8097244-8097291)
chr5 (382-429)||(32872925-32872972)
chr5 (382-428)||(13089809-13089855)
chr5 (382-427)||(1293113-1293158)
chr5 (392-433)||(35098769-35098810)
chr5 (382-426)||(4719650-4719694)
chr5 (388-428)||(7144575-7144615)
chr5 (382-426)||(21155987-21156031)
chr5 (382-426)||(29462993-29463037)
chr5 (388-428)||(29803223-29803263)
chr5 (382-426)||(31748336-31748380)
chr5 (388-428)||(34428158-34428198)
chr5 (392-428)||(35165677-35165713)
chr5 (382-426)||(40039290-40039334)
chr5 (382-426)||(40829414-40829458)
[»] chr3 (19 HSPs)
chr3 (382-428)||(288723-288769)
chr3 (382-428)||(50559239-50559285)
chr3 (389-429)||(44937216-44937256)
chr3 (382-426)||(51137063-51137107)
chr3 (388-427)||(36799397-36799436)
chr3 (389-428)||(46952947-46952986)
chr3 (389-427)||(11056945-11056983)
chr3 (388-426)||(41442172-41442210)
chr3 (388-426)||(44112903-44112941)
chr3 (389-427)||(50876385-50876423)
chr3 (382-427)||(41637307-41637352)
chr3 (387-428)||(53392096-53392137)
chr3 (382-430)||(26550233-26550281)
chr3 (388-428)||(27198193-27198233)
chr3 (384-428)||(32146015-32146059)
chr3 (388-428)||(45528975-45529015)
chr3 (386-430)||(48405406-48405450)
chr3 (382-426)||(49021711-49021755)
chr3 (382-426)||(52963343-52963387)
[»] chr2 (6 HSPs)
chr2 (382-428)||(24766150-24766196)
chr2 (387-429)||(29168722-29168764)
chr2 (387-428)||(22966784-22966825)
chr2 (388-428)||(8352833-8352873)
chr2 (382-430)||(42075387-42075435)
chr2 (382-426)||(45376248-45376292)
[»] chr7 (11 HSPs)
chr7 (382-423)||(38259066-38259107)
chr7 (387-431)||(2849553-2849597)
chr7 (387-426)||(677807-677846)
chr7 (382-429)||(12007213-12007260)
chr7 (382-425)||(23910278-23910321)
chr7 (387-429)||(5068655-5068697)
chr7 (382-428)||(47448824-47448870)
chr7 (388-432)||(25332531-25332576)
chr7 (386-426)||(29763830-29763870)
chr7 (388-428)||(37392041-37392081)
chr7 (399-427)||(39415417-39415445)
[»] chr8 (12 HSPs)
chr8 (384-427)||(5849595-5849638)
chr8 (388-431)||(39021476-39021519)
chr8 (382-425)||(44061718-44061761)
chr8 (386-431)||(12655917-12655962)
chr8 (382-426)||(5601014-5601058)
chr8 (382-426)||(5639562-5639606)
chr8 (386-426)||(14531621-14531661)
chr8 (382-426)||(23754734-23754778)
chr8 (382-430)||(24795243-24795291)
chr8 (382-426)||(26026896-26026940)
chr8 (389-425)||(32020488-32020524)
chr8 (389-429)||(37392151-37392191)
[»] chr4 (13 HSPs)
chr4 (384-431)||(1796011-1796058)
chr4 (388-431)||(42853934-42853977)
chr4 (382-429)||(51255743-51255790)
chr4 (384-426)||(31995945-31995987)
chr4 (382-428)||(56557731-56557777)
chr4 (387-428)||(961274-961315)
chr4 (387-428)||(8455859-8455900)
chr4 (382-423)||(37060320-37060361)
chr4 (384-428)||(30546630-30546674)
chr4 (388-428)||(36444428-36444468)
chr4 (387-431)||(39449168-39449212)
chr4 (388-428)||(44272843-44272883)
chr4 (384-428)||(44626603-44626647)
[»] scaffold0110 (1 HSPs)
scaffold0110 (382-428)||(28354-28400)
[»] scaffold0054 (1 HSPs)
scaffold0054 (389-430)||(31623-31664)
[»] chr6 (3 HSPs)
chr6 (387-428)||(31204842-31204883)
chr6 (381-429)||(10053184-10053232)
chr6 (388-428)||(11635615-11635655)
[»] scaffold0178 (1 HSPs)
scaffold0178 (382-426)||(9776-9820)


Alignment Details
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 42843376 - 42843418
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  42843376 caaaagttatcaaaaaattgttgtacaaatatcatttctctta 42843418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 4213116 - 4213070
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  4213116 tgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctctt 4213070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 11947839 - 11947790
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||||| ||| ||||| |||||||||||| |||||||||||||    
T  11947839 tgtcacaaaagttgtcataaaatggttgtacaaatatcatttctcttaat 11947790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 18639733 - 18639778
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||||    
T  18639733 tcacaaaagttatcaaaaaatcgttgtacaaatatcatttatctta 18639778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 26585204 - 26585249
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||    
T  26585204 acaaaagttatcacaaaatagttgtacaaatatcatttctcttaat 26585249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 47642634 - 47642678
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  47642634 tgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 47642678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 23554789 - 23554747
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    |||| |||||||||||| |||||||||||| ||||||||||||    
T  23554789 aaaaattatcaaaaaatggttgtacaaatatcatttctcttaa 23554747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 29706734 - 29706776
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  29706734 acaaaagttatcataaaatggttgtacaaatatcatttctctt 29706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 432
Target Start/End: Original strand, 45863748 - 45863798
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaatc 432  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||| |||||    
T  45863748 tgtcacaaaaattatcaaaaaataattgtacaaatatcatttctcataatc 45863798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 48983695 - 48983741
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||||    
T  48983695 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 48983741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 9566988 - 9567033
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||| ||||||||| ||||| |||||| |||||||||    
T  9566988 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctct 9567033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 25672381 - 25672344
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacattt 423  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  25672381 acaaaaattatcaaaaaattgttgtacaaatatcattt 25672344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 27352669 - 27352628
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||||||| ||||| |||||||||||| ||||||||||    
T  27352669 caaaagttatcacaaaatggttgtacaaatatcatttctctt 27352628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 29489393 - 29489434
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    |||||||||| ||||| |||||||||||| ||||||||||||    
T  29489393 aaagttatcacaaaatggttgtacaaatatcatttctcttaa 29489434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 45333397 - 45333356
Alignment:
Q  385 cacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||||||||||||| | |||||||||||| ||||||||    
T  45333397 cacaaaagttatcaaaaagtggttgtacaaatatcatttctc 45333356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 19947768 - 19947812
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  19947768 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 19947812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 41619100 - 41619060
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatt 422  Q
    |||| |||||||||||||||||| |||||||||||| ||||    
T  41619100 tgtctcaaaagttatcaaaaaatagttgtacaaatatcatt 41619060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 49020431 - 49020475
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| | ||||||| |||||||||||| ||||||||    
T  49020431 tgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 49020475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 19844338 - 19844382
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  19844338 tcacaaaagttatcaaaaaatagttgtacaaatatcatttctctt 19844382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 17097829 - 17097874
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  17097829 tgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctct 17097874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 8097291 - 8097244
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||||||||||| | |||||||||||| ||||| |||||||    
T  8097291 tcacaaaagttatcaaaaattggttgtacaaatatcatttatcttaat 8097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 32872925 - 32872972
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    ||||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  32872925 tgtcacaaaagttgtcaaaaaatagttgttcaaatatcatttctctta 32872972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 13089809 - 13089855
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||||    
T  13089809 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 13089855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 1293113 - 1293158
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||||    
T  1293113 tgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctct 1293158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 35098769 - 35098810
Alignment:
Q  392 gttatcaaaaaattgttgtacaaataacatttctcttaatct 433  Q
    ||||||||||||| |||||||||||| |||||||||| ||||    
T  35098769 gttatcaaaaaatggttgtacaaatatcatttctctttatct 35098810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 4719694 - 4719650
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||| | |||||||||||| ||||||||    
T  4719694 tgtcacaaaagttgtcaaaaattggttgtacaaatatcatttctc 4719650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 7144615 - 7144575
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  7144615 aaaagttatcataaaatggttgtacaaatatcatttctctt 7144575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 21156031 - 21155987
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  21156031 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 21155987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 29463037 - 29462993
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  29463037 tgtcacaaacgttgtcaaaaaattgttgttcaaatatcatttctc 29462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 29803263 - 29803223
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||| ||||||||| |||||||||||| ||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 29803223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 31748380 - 31748336
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| | ||||||| |||||||||||| ||||||||    
T  31748380 tgtcacaaaagttgtaaaaaaatagttgtacaaatatcatttctc 31748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 34428198 - 34428158
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||| ||||||||| |||||||||||| ||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 34428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 35165713 - 35165677
Alignment:
Q  392 gttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  35165713 gttatcaaaaaatagttgtacaaatatcatttctctt 35165677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 40039334 - 40039290
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||||| |||||||||||| ||||| |||||| ||||||||    
T  40039334 tgtcacaaaaattatcaaaaaatagttgttcaaatatcatttctc 40039290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 40829458 - 40829414
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||||| |||| ||||||| |||||||||||| ||||||||    
T  40829458 tgtcacaaaaattattaaaaaatggttgtacaaatatcatttctc 40829414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 288769 - 288723
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  288769 tgtcacaaaagttataaaaaaattgttgttcaaatatcatttctctt 288723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 50559239 - 50559285
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  50559239 tgtcacaaaagttgtcaaaaaatagttgtacaaatatcatttctctt 50559285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 44937256 - 44937216
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  44937256 aaagttgtcaaaaaattgttgtacaaatatcatttctctta 44937216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 51137063 - 51137107
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  51137063 tgtcacaaaagttattaaaaaatagttgtacaaatatcatttctc 51137107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 36799436 - 36799397
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  36799436 aaaagttatcaaaaaatagttgtacaaatatcatttctct 36799397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 46952986 - 46952947
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  46952986 aaagttatcaaaaaatggttgtacaaatatcatttctctt 46952947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 11056945 - 11056983
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  11056945 aaagttgtcaaaaaattgttgtacaaatatcatttctct 11056983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 41442210 - 41442172
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  41442210 aaaagttatcaaaaaatggttgtacaaataccatttctc 41442172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 44112941 - 44112903
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  44112941 aaaaattatcaaaaaatagttgtacaaataacatttctc 44112903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 50876385 - 50876423
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  50876385 aaagttgtcaaaaaattgttgtacaaatatcatttctct 50876423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 41637307 - 41637352
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||| ||||||||| |||||||||||| || ||||||    
T  41637307 tgtcacaaaagttgtcaaaaaatagttgtacaaatatcacttctct 41637352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 53392096 - 53392137
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||| ||||||||||||||||||||||  |||||||||    
T  53392096 caaaagttgtcaaaaaattgttgtacaaatattatttctctt 53392137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 26550281 - 26550233
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    |||||||||| |||| ||||||| ||||| |||||| ||||||||||||    
T  26550281 tgtcacaaaaattattaaaaaatggttgtgcaaatatcatttctcttaa 26550233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 27198193 - 27198233
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||||||||||||  ||||||||||| ||||||||||    
T  27198193 aaaagttatcaaaaaatgattgtacaaatatcatttctctt 27198233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 32146015 - 32146059
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||| ||||||||| ||||| |||||| ||||||||||    
T  32146015 tcacaaaagttgtcaaaaaatagttgttcaaatatcatttctctt 32146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 45528975 - 45529015
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||| ||||||||| |||||||||||| ||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 45529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 48405450 - 48405406
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    ||||||||| ||| ||||| |||||||||||| ||||||||||||    
T  48405450 acaaaagttgtcacaaaatggttgtacaaatatcatttctcttaa 48405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 49021755 - 49021711
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||||| ||||||| | |||||||||| ||||||||    
T  49021755 tgtcacaaaagttattaaaaaatggatgtacaaatatcatttctc 49021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 52963343 - 52963387
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| | ||||||| |||||||||||| ||||||||    
T  52963343 tgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 52963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 24766196 - 24766150
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  24766196 tgtcacaaaagttattaaaaaatggttgtacaaatatcatttctctt 24766150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 29168764 - 29168722
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    |||||||| ||||||||| |||||||||||| |||||||||||    
T  29168764 caaaagttgtcaaaaaatggttgtacaaatatcatttctctta 29168722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 22966825 - 22966784
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||||||||||| | |||||||||||| ||||||||||    
T  22966825 caaaagttatcaaaaagtggttgtacaaatatcatttctctt 22966784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 8352873 - 8352833
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||| ||||||| |||||||||||| ||||||||||    
T  8352873 aaaagttattaaaaaatagttgtacaaatatcatttctctt 8352833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 42075387 - 42075435
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    ||||||||||||| | | | |||||||||||||||| ||||||||||||    
T  42075387 tgtcacaaaagttgttatagaattgttgtacaaatatcatttctcttaa 42075435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 45376248 - 45376292
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||| | |||||||||||| ||||||||    
T  45376248 tgtcacaaaagttgtcaaaaagtggttgtacaaatatcatttctc 45376292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 38259107 - 38259066
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacattt 423  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  38259107 tgtcacaaaagttatcaaaaaatggttgtacaaatatcattt 38259066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 2849553 - 2849597
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  2849553 caaaagttatcaaaaaataattgtacaaatatcatttctcttaat 2849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 677807 - 677846
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  677807 caaaagttatcaaaaaatagttgtacaaataatatttctc 677846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 12007213 - 12007260
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    ||||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  12007213 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctta 12007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 23910278 - 23910321
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttct 425  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||    
T  23910278 tgtcacaaaagttgtcaaaaaatggttgtacaaatatcatttct 23910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 5068655 - 5068697
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    |||||||||||| ||||| |||||||||||| |||||||||||    
T  5068655 caaaagttatcataaaatggttgtacaaatatcatttctctta 5068697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 47448870 - 47448824
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||||    
T  47448870 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctt 47448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 25332531 - 25332576
Alignment:
Q  388 aaaagttatcaaaaaattg-ttgtacaaataacatttctcttaatc 432  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||    
T  25332531 aaaagttatcaaaaaaatggttgtacaaatatcatttctcttaatc 25332576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 29763870 - 29763830
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||| |||||||||||| ||||||||    
T  29763870 acaaaagttatcacaaaatggttgtacaaatatcatttctc 29763830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 37392081 - 37392041
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||| ||||||||| |||||||||||| ||||||||||    
T  37392081 aaaagttgtcaaaaaatggttgtacaaatatcatttctctt 37392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 39415445 - 39415417
Alignment:
Q  399 aaaaattgttgtacaaataacatttctct 427  Q
    |||||||||||||||||||||||||||||    
T  39415445 aaaaattgttgtacaaataacatttctct 39415417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 5849595 - 5849638
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctct 427  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||    
T  5849595 tcacaaaagttatcaaaaaatggttgttcaaatatcatttctct 5849638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 431
Target Start/End: Original strand, 39021476 - 39021519
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||    
T  39021476 aaaagttatcacaaaatggttgtacaaatatcatttctcttaat 39021519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Complemental strand, 44061761 - 44061718
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttct 425  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||    
T  44061761 tgtcacaaaagttatcaaaaaatggttgttcaaatatcatttct 44061718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 12655962 - 12655917
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||| | ||||| |||||||||||| |||||||||||||    
T  12655962 acaaaagttattataaaatggttgtacaaatatcatttctcttaat 12655917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 5601014 - 5601058
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  5601014 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 5639606 - 5639562
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  5639606 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 14531661 - 14531621
Alignment:
Q  386 acaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||| |||||||||||| ||||||||    
T  14531661 acaaaagttatcataaaatagttgtacaaatatcatttctc 14531621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 23754734 - 23754778
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||||| ||||||| ||||| |||||| ||||||||    
T  23754734 tgtcacaaaagttattaaaaaatggttgttcaaatatcatttctc 23754778  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 24795291 - 24795243
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    ||||| ||||||||||| ||||||||| || ||||| ||||||||||||    
T  24795291 tgtcataaaagttatcacaaaattgttttataaatatcatttctcttaa 24795243  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 26026940 - 26026896
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  26026940 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 26026896  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 32020488 - 32020524
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttct 425  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32020488 aaagttatcaaaaaatggttgtacaaatatcatttct 32020524  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 37392151 - 37392191
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    |||||| ||||||||| |||||||||||| |||||||||||    
T  37392151 aaagttgtcaaaaaatggttgtacaaatatcatttctctta 37392191  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 1796011 - 1796058
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||||||| | |||||||||||||||||||| |||||||| ||||    
T  1796011 tcacaaaagttgttaaaaaattgttgtacaaatatcatttctcataat 1796058  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 42853977 - 42853934
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcatttctcttaat 42853934  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 51255790 - 51255743
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    ||||||||||||| ||||||||| ||||| |||||| |||||||||||    
T  51255790 tgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctctta 51255743  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 31995945 - 31995987
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||| |||||||||||| |||||||||||| ||||||||    
T  31995945 tcacaaaatttatcaaaaaatagttgtacaaatatcatttctc 31995987  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 56557777 - 56557731
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||| ||| ||||||||||| |||||| ||||||||||    
T  56557777 tgtcacaaaagttgtcataaaattgttgttcaaatatcatttctctt 56557731  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 961315 - 961274
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  961315 caaaagttatcaaaaaattattgtacaaatattatttctctt 961274  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 8455900 - 8455859
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||| ||| ||||| |||||||||||||||||||||||    
T  8455900 caaaagttgtcacaaaatagttgtacaaataacatttctctt 8455859  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 37060361 - 37060320
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacattt 423  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||    
T  37060361 tgtcacaaaagttgtcaaaaaatggttgttcaaataacattt 37060320  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 30546674 - 30546630
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||| ||| ||||||||||||||  |||||||||    
T  30546674 tcacaaaagttatcataaatttgttgtacaaatataatttctctt 30546630  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 36444428 - 36444468
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  36444428 aaaagttatcataaaatggttgtacaaatatcatttctctt 36444468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 39449212 - 39449168
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctcttaat 431  Q
    |||||||||||| ||||| |||||| ||||| |||||||||||||    
T  39449212 caaaagttatcacaaaatagttgtataaatatcatttctcttaat 39449168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 44272843 - 44272883
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||| ||||||||| |||||||||||| ||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcatttctctt 44272883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 44626647 - 44626603
Alignment:
Q  384 tcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||| ||||| ||||| |||||| ||||||||||    
T  44626647 tcacaaaagttatcataaaatagttgttcaaatatcatttctctt 44626603  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 28354 - 28400
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    ||||||||||||||||||||| | ||||| |||||| ||||||||||    
T  28354 tgtcacaaaagttatcaaaaagtggttgttcaaatatcatttctctt 28400  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 31623 - 31664
Alignment:
Q  389 aaagttatcaaaaaattgttgtacaaataacatttctcttaa 430  Q
    |||||| ||||||||| |||||||||||| ||||||||||||    
T  31623 aaagttgtcaaaaaatggttgtacaaatatcatttctcttaa 31664  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 31204842 - 31204883
Alignment:
Q  387 caaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  31204842 caaaagttatcaaaaaatggttgtagaaatatcatttctctt 31204883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 10053184 - 10053232
Alignment:
Q  381 atgtcacaaaagttatcaaaaaattgttgtacaaataacatttctctta 429  Q
    |||||| ||||||||||||||||| |||||  ||||| |||||||||||    
T  10053184 atgtcataaaagttatcaaaaaatagttgtttaaatatcatttctctta 10053232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 11635655 - 11635615
Alignment:
Q  388 aaaagttatcaaaaaattgttgtacaaataacatttctctt 428  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  11635655 aaaaattatcataaaattgttgtacaaatatcatttctctt 11635615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 9820 - 9776
Alignment:
Q  382 tgtcacaaaagttatcaaaaaattgttgtacaaataacatttctc 426  Q
    |||||||||| |||| ||||||| |||||||||||| ||||||||    
T  9820 tgtcacaaaaattataaaaaaatggttgtacaaatatcatttctc 9776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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