View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8707_low_10 (Length: 260)
Name: NF8707_low_10
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 51730429 - 51730188
Alignment:
| Q |
1 |
tgaccaacatgctgctaaccaacttcccaacaacaaaaaggttgtggtcgttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgca |
100 |
Q |
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| T |
51730429 |
tgaccaacaagctgctaatcaacttctcaacaacaaaaaggttgttgtggttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgca |
51730330 |
T |
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| Q |
101 |
aaccaaggtaattaattaaaacctactctcaagttacttgattatgaatttttatgtaattaaaaaatcaaaactaatatgcacaatatagaatgtcgtt |
200 |
Q |
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| T |
51730329 |
aaccaaggtaattaattaaaacctactctcaagttacttgattatgaatttttatgtaattaaaaaatcaaaactaa-atgcacaatatagaatgtcgtt |
51730231 |
T |
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| Q |
201 |
gtatattgcttctcatgacaact-aagagtctagcctccatag |
242 |
Q |
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| T |
51730230 |
gtatattgcttctcatgacaactaaagagtctagcctccatag |
51730188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 19190989 - 19190916
Alignment:
| Q |
38 |
aaggttgtggtcgttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgcaaaccaaggtaa |
111 |
Q |
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| T |
19190989 |
aaggttgtcgttgtgggttacaaaaaatcagctattgatctagccatggagtgtgcacaggcaaaccaaggtaa |
19190916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 6897685 - 6897609
Alignment:
| Q |
35 |
aaaaaggttgtggtcgttggtttcaaaaaatctgctatcgatttagtcatggagtgtgcacatgcaaaccaaggtaa |
111 |
Q |
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| T |
6897685 |
aaaaaagttgtggtgattggtttcaaaaaatcagctactgatattgccatggaatgtgcacaggaaaaccaaggtaa |
6897609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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