View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8707_low_12 (Length: 251)
Name: NF8707_low_12
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 18052279 - 18052487
Alignment:
| Q |
19 |
atactgtgactcaaaactgggctgctgttatccgaaaaccggaaaacctgcggccgattttactatttatggactcaggcctagtttcaatattaatgga |
118 |
Q |
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| T |
18052279 |
atactgtgactcaaaactaggctgctgttatccgaaaaccggtaaaccggcggcagattttactatttatggactcaggcctagtttcaatattaatgga |
18052378 |
T |
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| Q |
119 |
acatctcccacaaactgtgatattcaaagtgtctttaataaatctaaggtattcattttatttaaattgtctttatgattttattagtgtatttctctac |
218 |
Q |
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| T |
18052379 |
acatctcccacaaactgtgatattcaaagtgtctttaataaatctaaggtattcattgtatttaaattgtctttatgattttattagtgtatttctctac |
18052478 |
T |
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| Q |
219 |
tgaaaaatt |
227 |
Q |
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||||||||| |
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| T |
18052479 |
tgaaaaatt |
18052487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 18034567 - 18034713
Alignment:
| Q |
22 |
ctgtgactcaaaactgggctgctgttatccgaaaaccggaaaacctgcggccgattttactatttatggactcaggcctagtttcaatattaatggaaca |
121 |
Q |
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| T |
18034567 |
ctgtgactcaaagcagagctgctgttttccgaaaaccggaaaaccgacagcagattttaccattgctggacttaggcctaacttcaatg---atggatca |
18034663 |
T |
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| Q |
122 |
tctcccacaaactgtgatattcaaagtgtctttaataaatctaaggtatt |
171 |
Q |
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| T |
18034664 |
tctccctcaaactgtaatattaaaagtgtctttgataaatctaaggtatt |
18034713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18047233 - 18047279
Alignment:
| Q |
130 |
aaactgtgatattcaaagtgtctttaataaatctaaggtattcattt |
176 |
Q |
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| T |
18047233 |
aaactgtgatattcatagtgtctttgataaatctaaggtattaattt |
18047279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18028758 - 18028818
Alignment:
| Q |
19 |
atactgtgactcaaaactgggctgctgttatccgaaaaccggaaaacctgcggccgatttt |
79 |
Q |
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|||||||||| |||| | | |||||||||||||||||||||||||||| |||| |||||| |
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| T |
18028758 |
atactgtgacacaaagcagagctgctgttatccgaaaaccggaaaaccgacggcagatttt |
18028818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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