View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8707_low_14 (Length: 245)

Name: NF8707_low_14
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8707_low_14
NF8707_low_14
[»] chr2 (2 HSPs)
chr2 (25-230)||(3470247-3470452)
chr2 (76-210)||(12530109-12530244)
[»] chr7 (4 HSPs)
chr7 (66-218)||(18573149-18573299)
chr7 (91-230)||(18573258-18573395)
chr7 (91-199)||(18573298-18573406)
chr7 (91-128)||(18573382-18573419)
[»] chr5 (3 HSPs)
chr5 (27-199)||(5538989-5539159)
chr5 (95-158)||(5538988-5539051)
chr5 (141-230)||(5539000-5539089)
[»] chr1 (5 HSPs)
chr1 (28-230)||(3400007-3400207)
chr1 (35-158)||(42606289-42606410)
chr1 (35-157)||(27120883-27121003)
chr1 (139-211)||(27120943-27121015)
chr1 (70-125)||(28380664-28380719)
[»] chr3 (4 HSPs)
chr3 (28-230)||(20000090-20000290)
chr3 (61-128)||(7851088-7851155)
chr3 (91-218)||(8820922-8821047)
chr3 (28-195)||(8820985-8821150)
[»] chr8 (6 HSPs)
chr8 (30-200)||(38810030-38810198)
chr8 (61-216)||(33933422-33933577)
chr8 (99-179)||(33933417-33933497)
chr8 (141-230)||(38810042-38810131)
chr8 (27-121)||(1807264-1807356)
chr8 (91-124)||(38810022-38810055)
[»] chr4 (7 HSPs)
chr4 (28-157)||(20634509-20634636)
chr4 (36-157)||(36010889-36011008)
chr4 (62-196)||(44079035-44079169)
chr4 (68-174)||(40287304-40287410)
chr4 (137-218)||(40287302-40287383)
chr4 (138-230)||(44079043-44079135)
chr4 (141-200)||(36010888-36010947)
[»] scaffold0001 (2 HSPs)
scaffold0001 (28-187)||(509582-509739)
scaffold0001 (136-230)||(509646-509740)
[»] chr6 (1 HSPs)
chr6 (109-155)||(34220472-34220518)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 3470247 - 3470452
Alignment:
Q  25 gggtggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctc 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3470247 gggtggactagtatggaggaccataccacgcggactctctccaatacattaactattcaatatgtatagctcagtttgatcgtacaggtcacgtgagctc 3470346  T
Q  125 cacctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcag 224  Q
    ||||||||||  |||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  3470347 cacctgattagctcagcttgatcgttcaagtcacatgagctctacctgctcagcttagcttgaacgttcaggtcacataagcttcatctgcttaactcag 3470446  T
Q  225 tttgat 230  Q
    ||||||    
T  3470447 tttgat 3470452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 12530244 - 12530109
Alignment:
Q  76 actattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctc--cacctgattaattcagcttgatcgttcaggtcatatgaactctacctgc 173  Q
    ||||||||| ||||| ||||||| |||||||| ||||||||||||||||  |||||| |||| ||| |||||| ||  || |||  ||| ||| ||||||    
T  12530244 actattcaacatgtacagctcagcttgatcgttcaggtcacgtgagctccacacctgcttaactcaacttgatagtatagatcacgtgagctccacctgc 12530145  T
Q  174 tcagctcagcttgaacgttcaggtcacataagctcca 210  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  12530144 tcagctcagcttgaa-gttcaggtcacatgagctcca 12530109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 18573149 - 18573299
Alignment:
Q  66 caatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaact 165  Q
    ||||| ||||||||||||| ||||| | ||||| |||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||| ||| ||    
T  18573149 caatatattgactattcaacatgtacaactcagcttgatcgtacaggtcacgtgagctccacctgcttagctcagcttgatcgttcaggtcatgtgagct 18573248  T
Q  166 ctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgctta 218  Q
    | ||||| | ||||||||||||||||||||||  ||| |||||||||||||||    
T  18573249 ccacctgtttagctcagcttgaacgttcaggt--catgagctccatctgctta 18573299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 18573258 - 18573395
Alignment:
Q  91 tagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacg 190  Q
    |||||||| |||| ||| |||||||  ||||||||| ||| |||  | || ||||||||||||||||  ||| ||| ||||||| |||||| ||||||||    
T  18573258 tagctcagcttgaacgttcaggtca--tgagctccatctgcttagcttagtttgatcgttcaggtcacgtgagctccacctgcttagctcaacttgaacg 18573355  T
Q  191 ttcaggtcacataagctccatctgcttaattcagtttgat 230  Q
    |||||||||||| |||||||||| ||||  ||||||||||    
T  18573356 ttcaggtcacatgagctccatctacttagctcagtttgat 18573395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 18573298 - 18573406
Alignment:
Q  91 tagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacg 190  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||  ||| ||||| ||||||||||| |||| ||| | || || ||||||| |||| ||    
T  18573298 tagcttagtttgatcgttcaggtcacgtgagctccacctgcttagctcaacttgaacgttcaggtcacatgagctccatctacttagctcagtttgatcg 18573397  T
Q  191 ttcaggtca 199  Q
    | |||||||    
T  18573398 tccaggtca 18573406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 18573382 - 18573419
Alignment:
Q  91 tagctcagtttgatcgtccaggtcacgtgagctccacc 128  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  18573382 tagctcagtttgatcgtccaggtcatgtgagctccacc 18573419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 5539159 - 5538989
Alignment:
Q  27 gtggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctcca 126  Q
    ||||||| |||||||||||||||||||| | ||||||  | ||||||||||||||||| ||||| | ||||  |||||| | ||||||||||||||| ||    
T  5539159 gtggactggtatggaggaccataccacgtggactctc--ctatacattgactattcaacatgtacaactcaacttgatcattcaggtcacgtgagcttca 5539062  T
Q  127 cctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtca 199  Q
    |||| ||| ||||| ||||||||||||||||  ||| ||| | |||||||| |||| |||| |||||||||||    
T  5539061 cctgcttagttcagtttgatcgttcaggtcacgtgagctccatctgctcagttcagtttgatcgttcaggtca 5538989  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 5539051 - 5538988
Alignment:
Q  95 tcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcat 158  Q
    ||||||||||||| |||||||||||||||||| ||| | | ||||| |||||||||||||||||    
T  5539051 tcagtttgatcgttcaggtcacgtgagctccatctgctcagttcagtttgatcgttcaggtcat 5538988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 5539089 - 5539000
Alignment:
Q  141 cttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagtttgat 230  Q
    ||||||| |||||||||  ||| ||  ||||||| || |||| |||| |||||||||||| | ||||||||||||| | |||||||||||    
T  5539089 cttgatcattcaggtcacgtgagcttcacctgcttagttcagtttgatcgttcaggtcacgtgagctccatctgctcagttcagtttgat 5539000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 3400007 - 3400207
Alignment:
Q  28 tggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccac 127  Q
    |||||| |||||||||||||||||||| | |||||     ||||||||||||||||| ||||| | || || |||||||| |||||||||||||||||||    
T  3400007 tggactggtatggaggaccataccacgtggactcttat--atacattgactattcaacatgtacaacttagcttgatcgttcaggtcacgtgagctccac 3400104  T
Q  128 ctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagttt 227  Q
    ||| |||  ||||||||||| |||||||||  |||  || ||| ||| |||| ||||||| |||||||||||  | ||||||| |||||||  |||||||    
T  3400105 ctgcttagctcagcttgatcattcaggtcacgtgagttccaccagcttagcttagcttgatcgttcaggtcatgtgagctccacctgcttagctcagttt 3400204  T
Q  228 gat 230  Q
    |||    
T  3400205 gat 3400207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 42606289 - 42606410
Alignment:
Q  35 gtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgatta 134  Q
    |||| ||||||||||||||| | ||||||  | ||||||||||||||||||||||| | ||||  |||||||| |||||||||||| || || ||  |||    
T  42606289 gtatagaggaccataccacgtggactctc--ctatacattgactattcaatatgtacaactcaacttgatcgttcaggtcacgtgaacttcatcttctta 42606386  T
Q  135 attcagcttgatcgttcaggtcat 158  Q
     ||||| |||||||||||||||||    
T  42606387 gttcagtttgatcgttcaggtcat 42606410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 27120883 - 27121003
Alignment:
Q  35 gtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgatta 134  Q
    |||||||||||||||||||| | ||||||  |  |||||||||||||||| ||||| | || || |||||| |  |||||| |||||||||||||| |||    
T  27120883 gtatggaggaccataccacgtggactctc--ctttacattgactattcaacatgtacaacttagcttgatcattaaggtcatgtgagctccacctgctta 27120980  T
Q  135 attcagcttgatcgttcaggtca 157  Q
      |||||||||||||||||||||    
T  27120981 gctcagcttgatcgttcaggtca 27121003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 27120943 - 27121015
Alignment:
Q  139 agcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccat 211  Q
    ||||||||| || ||||||| ||| ||| ||||||| |||||||||||| |||||||||||| | ||||||||    
T  27120943 agcttgatcattaaggtcatgtgagctccacctgcttagctcagcttgatcgttcaggtcacgtgagctccat 27121015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 28380719 - 28380664
Alignment:
Q  70 acattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctcc 125  Q
    ||||||||||||||| ||||||||||||| |||| ||| ||||||| | |||||||    
T  28380719 acattgactattcaacatgtatagctcagcttgagcgttcaggtcatgggagctcc 28380664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 20000090 - 20000290
Alignment:
Q  28 tggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccac 127  Q
    |||||| |||||||||||||||||||| | |||| ||  | |||||||||||||||| ||||| | ||||  |||||||| |||||||||||||||||||    
T  20000090 tggactggtatggaggaccataccacgtggactc-ctata-tacattgactattcaacatgtacaactcaacttgatcgttcaggtcacgtgagctccac 20000187  T
Q  128 ctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagttt 227  Q
    ||| |||  ||||||||||| |||||||||  |||  || ||| ||| |||| ||||||| |||||||||||  | ||||||| |||||||  |||||||    
T  20000188 ctgcttagctcagcttgatcattcaggtcacgtgagttccaccagcttagcttagcttgatcgttcaggtcatgtgagctccacctgcttagctcagttt 20000287  T
Q  228 gat 230  Q
    |||    
T  20000288 gat 20000290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 7851155 - 7851088
Alignment:
Q  61 ctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacc 128  Q
    |||||| ||| ||||||||||||| ||||||||||||| ||||||||  ||| |||||||||||||||    
T  7851155 ctctcctatagattgactattcaacatgtatagctcagcttgatcgtttaggccacgtgagctccacc 7851088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 8821047 - 8820922
Alignment:
Q  91 tagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacg 190  Q
    |||||||| |||||| | |||||||||||||||||||||  |||  |||| |||||||||||| |||| |||   |||||||||  ||||||||| || |    
T  8821047 tagctcaggttgatcattcaggtcacgtgagctccacctacttagctcagtttgatcgttcagatcatgtga--gctacctgctttgctcagcttaaatg 8820950  T
Q  191 ttcaggtcacataagctccatctgctta 218  Q
    | |||| ||  | |||||||||||||||    
T  8820949 tccaggccatgtgagctccatctgctta 8820922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 8821150 - 8820985
Alignment:
Q  28 tggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccac 127  Q
    ||||||||||||||||||||| ||||| | |  |||||| ||||||||||||||||  || || | ||||   ||||||| || |||||| ||||||||     
T  8821150 tggactagtatggaggaccatgccacgtgga--ctctcctatacattgactattcaccatatacaactcaacctgatcgttcaagtcacgagagctccag 8821053  T
Q  128 ctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcag 195  Q
    ||  |||  |||| |||||| |||||||||  ||| ||| |||| || ||||||| |||| |||||||    
T  8821052 cttcttagctcaggttgatcattcaggtcacgtgagctccacctacttagctcagtttgatcgttcag 8820985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 38810198 - 38810030
Alignment:
Q  30 gactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacct 129  Q
    |||| ||||||||||||||| |||| | ||||||  | ||||||||||||||||| ||||| ||||||  |||||||| |||||||||||||||||| ||    
T  38810198 gactggtatggaggaccatatcacgtggactctc--ctatacattgactattcaacatgtacagctcaacttgatcgttcaggtcacgtgagctccatct 38810101  T
Q  130 gattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcac 200  Q
    | |||  ||||||||||||||||| |||| ||| ||| | ||||| ||||||| |||| ||| ||| ||||    
T  38810100 gcttagctcagcttgatcgttcagatcatgtgagctccatctgcttagctcagtttgatcgtccagatcac 38810030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 33933577 - 33933422
Alignment:
Q  61 ctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatat 160  Q
    |||||| ||||||||||||| | |||||   ||||| |||||||||| |||||||| |||||||||  || |||  ||   |||||| |||||||||  |    
T  33933577 ctctcctatacattgactataccatatgctaagctcggtttgatcgttcaggtcacatgagctccatatgcttagctcgatttgatcattcaggtcacgt 33933478  T
Q  161 gaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgct 216  Q
    || ||| |||||||||||||||||||| |||||||||||| | ||||||| |||||    
T  33933477 gagctccacctgctcagctcagcttgatcgttcaggtcacttgagctccacctgct 33933422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 33933497 - 33933417
Alignment:
Q  99 tttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagct 179  Q
    ||||||| | |||||||||||||||||||||| | |  |||||||||||||||||||||  ||| ||| ||||||||||||    
T  33933497 tttgatcattcaggtcacgtgagctccacctgctcagctcagcttgatcgttcaggtcacttgagctccacctgctcagct 33933417  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 38810131 - 38810042
Alignment:
Q  141 cttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagtttgat 230  Q
    |||||||||||||||||  ||| ||| | ||||| |||||||||||| ||||||| |||  | |||||||||||||||  ||||||||||    
T  38810131 cttgatcgttcaggtcacgtgagctccatctgcttagctcagcttgatcgttcagatcatgtgagctccatctgcttagctcagtttgat 38810042  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 1807264 - 1807356
Alignment:
Q  27 gtggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgag 121  Q
    ||||||||||||| |||||||||||||| | |  |||| | |||| |||||||||||| ||||| | |||| ||||||| | |||||||| ||||    
T  1807264 gtggactagtatgtaggaccataccacgtgga--ctcttctataccttgactattcaacatgtacatctcaatttgatcattcaggtcacatgag 1807356  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 38810055 - 38810022
Alignment:
Q  91 tagctcagtttgatcgtccaggtcacgtgagctc 124  Q
    ||||||||||||||||||||| ||||||||||||    
T  38810055 tagctcagtttgatcgtccagatcacgtgagctc 38810022  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 20634509 - 20634636
Alignment:
Q  28 tggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccac 127  Q
    |||||| |||||||||||||||||||  | |  |||||| ||||||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||||    
T  20634509 tggactggtatggaggaccataccacatgga--ctctcctatacattgaatattcaacatgtacaactcagtttgatcgttcaggtcacgtgagctccac 20634606  T
Q  128 ctgattaattcagcttgatcgttcaggtca 157  Q
    ||| |||  | || |||||| |||||||||    
T  20634607 ctgcttagcttagtttgatctttcaggtca 20634636  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 36011008 - 36010889
Alignment:
Q  36 tatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgattaa 135  Q
    ||||||||||||||||||| | || || |   ||||||||||||||||| ||||| |||| |  ||||||||  ||||||||||| ||||||||| ||||    
T  36011008 tatggaggaccataccacgtggaccctttt--atacattgactattcaacatgtacagcttaacttgatcgtttaggtcacgtgaactccacctgcttaa 36010911  T
Q  136 ttcagcttgatcgttcaggtca 157  Q
     |||||||||||||||||||||    
T  36010910 ctcagcttgatcgttcaggtca 36010889  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 44079169 - 44079035
Alignment:
Q  62 tctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatg 161  Q
    ||||| |||||||||  ||||||  |||| | | ||| |||||| | |||||||| |||| |||||||| |||| |||||||||||||||||||||  ||    
T  44079169 tctcctatacattgatcattcaacgtgtacatcgcagcttgatcattcaggtcacatgaggtccacctgcttaactcagcttgatcgttcaggtcacgtg 44079070  T
Q  162 aactctacctgctcagctcagcttgaacgttcagg 196  Q
    | ||| ||||||| ||||||| |||| ||||||||    
T  44079069 agctccacctgcttagctcagtttgatcgttcagg 44079035  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 40287410 - 40287304
Alignment:
Q  68 atacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccacctgattaattcagcttgatcgttcaggtcatatgaactct 167  Q
    ||||||| ||||||||| ||||| | |||||||||||| | |||||||||||||||||||||| | |  | ||||||||||||||| ||| || | |||     
T  40287410 atacattcactattcaacatgtacaactcagtttgatcattcaggtcacgtgagctccacctgctcagcttagcttgatcgttcagatcacataagctcc 40287311  T
Q  168 acctgct 174  Q
    |||||||    
T  40287310 acctgct 40287304  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 40287383 - 40287302
Alignment:
Q  137 tcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgctta 218  Q
    |||| |||||| |||||||||  ||| ||| |||||||||||| ||||||| ||||||| |||||||||||||| |||||||    
T  40287383 tcagtttgatcattcaggtcacgtgagctccacctgctcagcttagcttgatcgttcagatcacataagctccacctgctta 40287302  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 44079135 - 44079043
Alignment:
Q  138 cagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagtttgat 230  Q
    |||||||||| ||||||||| ||||  || ||||||| | |||||||||| |||||||||||| | ||||||| |||||||  ||||||||||    
T  44079135 cagcttgatcattcaggtcacatgaggtccacctgcttaactcagcttgatcgttcaggtcacgtgagctccacctgcttagctcagtttgat 44079043  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 36010947 - 36010888
Alignment:
Q  141 cttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcac 200  Q
    |||||||||| ||||||  ||||||| ||||||| | |||||||||| ||||||||||||    
T  36010947 cttgatcgtttaggtcacgtgaactccacctgcttaactcagcttgatcgttcaggtcac 36010888  T

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Target: scaffold0001 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 509582 - 509739
Alignment:
Q  28 tggactagtatggaggaccataccacgcgaactctctccaatacattgactattcaatatgtatagctcagtttgatcgtccaggtcacgtgagctccac 127  Q
    |||||| ||||||| |||||||||||| | ||||||    ||||||||||||||||| || ||  | |||  || ||||| |||||||||||||||||||    
T  509582 tggactggtatggaagaccataccacgtggactctcat--atacattgactattcaacatatacggttcaacttaatcgttcaggtcacgtgagctccac 509679  T
Q  128 ctgattaattcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttga 187  Q
    ||| ||| |||||||||| || ||||||| | ||| ||||| ||||| || |||| ||||    
T  509680 ctgcttagttcagcttgaacgctcaggtcgtgtgagctctatctgcttagttcagtttga 509739  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 509646 - 509740
Alignment:
Q  136 ttcagcttgatcgttcaggtcatatgaactctacctgctcagctcagcttgaacgttcaggtcacataagctccatctgcttaattcagtttgat 230  Q
    |||| ||| |||||||||||||  ||| ||| ||||||| || |||||||||||| |||||||   | ||||| ||||||||| |||||||||||    
T  509646 ttcaacttaatcgttcaggtcacgtgagctccacctgcttagttcagcttgaacgctcaggtcgtgtgagctctatctgcttagttcagtttgat 509740  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 34220518 - 34220472
Alignment:
Q  109 caggtcacgtgagctccacctgattaattcagcttgatcgttcaggt 155  Q
    |||||||||||||||||||||| |||  |||||||||| ||||||||    
T  34220518 caggtcacgtgagctccacctgcttagctcagcttgattgttcaggt 34220472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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