View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8707_low_19 (Length: 217)

Name: NF8707_low_19
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8707_low_19
NF8707_low_19
[»] chr2 (5 HSPs)
chr2 (1-198)||(6409611-6409809)
chr2 (1-140)||(4318680-4318819)
chr2 (1-140)||(28626314-28626453)
chr2 (1-132)||(34212785-34212916)
chr2 (60-93)||(31015450-31015483)
[»] chr7 (2 HSPs)
chr7 (1-140)||(38176200-38176339)
chr7 (1-137)||(42415280-42415416)
[»] chr3 (3 HSPs)
chr3 (1-134)||(1527282-1527415)
chr3 (16-140)||(48798995-48799117)
chr3 (22-131)||(25500990-25501099)
[»] chr6 (1 HSPs)
chr6 (4-140)||(28909657-28909796)
[»] chr5 (2 HSPs)
chr5 (1-137)||(22497606-22497742)
chr5 (60-93)||(12186930-12186963)
[»] chr8 (2 HSPs)
chr8 (1-93)||(8618324-8618416)
chr8 (42-90)||(3664954-3665002)
[»] chr1 (3 HSPs)
chr1 (1-132)||(46342983-46343114)
chr1 (1-137)||(44585693-44585829)
chr1 (23-94)||(4816748-4816819)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 6409611 - 6409809
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||  |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6409611 ttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatattacaagctcgtcaccaagtctttaatttgattccatcttaaattcc 6409710  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgttggt-nnnnnnntaaattgattattgctccttaatcaggatcagttactaacatatcttataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409711 aaattgtgtgatgaatgaaatgatatgagtttttgttggtcaaaaaaattaattgattattgctccttaatcaggatcagttactaacatatcttataa 6409809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4318819 - 4318680
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| ||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  4318819 ttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttgtattcc 4318720  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgttggt 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4318719 aaattgtgtgatgaatgaaatgatatgagtttttgttggt 4318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 28626453 - 28626314
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  28626453 ttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcaccaagtctttgatttgattccattttgtattcc 28626354  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgttggt 140  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  28626353 aaattgtgtgatgaatgaaatggtatgagtttttgttggt 28626314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34212785 - 34212916
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| ||||||| |||| || || || |||||||||||||| | || |||||| ||||||||||||||||||||||| ||| |    
T  34212785 ttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgatttgattccatcttatattac 34212884  T
Q  101 aaattgtgtgatgaatgaaatgatatgagttt 132  Q
    |||   || |||||||||||| ||||||||||    
T  34212885 aaaccttgcgatgaatgaaataatatgagttt 34212916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 31015483 - 31015450
Alignment:
Q  60 gctcgtcaccaagtctttgatttgattccatctt 93  Q
    |||||||||||||| |||||||||||||||||||    
T  31015483 gctcgtcaccaagtgtttgatttgattccatctt 31015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 38176339 - 38176200
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||    
T  38176339 ttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattcc 38176240  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgttggt 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38176239 aaattgtgtgatgaatgaaatgatatgagtttttgttggt 38176200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 42415280 - 42415416
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || | |||  |||||||||||  || ||||||| ||| | |||  | ||||||||||| |  ||||||||||||||||| || |||      
T  42415280 ttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaggagtttgatttgattccatcatatattga 42415379  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgtt 137  Q
    || |  |||||  |||||||| |||||||||||||||    
T  42415380 aactattgtgagaaatgaaataatatgagtttttgtt 42415416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 1527282 - 1527415
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||    
T  1527282 ttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcaccaagtctttgatttgattccatcttgtattcc 1527381  T
Q  101 aaattgtgtgatgaatgaaatgatatgagttttt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  1527382 aaattgtgtgatgaatgaaatgatatgagttttt 1527415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 48799117 - 48798995
Alignment:
Q  16 cgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattccaaattgtgtgatgaa 115  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||| | ||| |||| ||| |||||||||||||||||  ||| ||||||||||||||||    
T  48799117 cgaatgttgtcgcttatagtttcgttagggtgtcaatattacaagttggtcgccaaatctatgatttgattccatcttgtatttcaaattgtgtgatgaa 48799018  T
Q  116 tgaaatgatatgagtttttgttggt 140  Q
    |||||||  ||||||||||||||||    
T  48799017 tgaaatg--atgagtttttgttggt 48798995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 25500990 - 25501099
Alignment:
Q  22 gtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattccaaattgtgtgatgaatgaaat 121  Q
    ||||||| |||||||| || ||||  |||| |||  | |||||||||| ||||||| |||||||||||||||  |||  || |  |||||||||||||||    
T  25500990 gtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttgattccatcttgtattgaaactattgtgatgaatgaaat 25501089  T
Q  122 gatatgagtt 131  Q
     |||| ||||    
T  25501090 aatataagtt 25501099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 28909796 - 28909657
Alignment:
Q  4 ttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattccaaa 103  Q
    |||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28909796 ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttgcattccaaa 28909697  T
Q  104 ttgtgtgatgaatgaaa---tgatatgagtttttgttggt 140  Q
    |||||||||||||||||   ||||||||||||||||||||    
T  28909696 ttgtgtgatgaatgaaatgatgatatgagtttttgttggt 28909657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22497742 - 22497606
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| |||| ||||||  || || ||||||||||||||||| ||||||||||  ||||||||||||||||| ||||  ||| |    
T  22497742 ttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgatttgattccttcttgtattac 22497643  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgtt 137  Q
    |||   || |||||||||||| |||||||||| ||||    
T  22497642 aaaccttgcgatgaatgaaataatatgagtttatgtt 22497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 12186930 - 12186963
Alignment:
Q  60 gctcgtcaccaagtctttgatttgattccatctt 93  Q
    |||||||||||||| |||||||||||||||||||    
T  12186930 gctcgtcaccaagtgtttgatttgattccatctt 12186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8618416 - 8618324
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatctt 93  Q
    ||||||||||| || |||||| |||||||||||| || || |||||||||||||||||  ||||||||||  |||| ||||||||||||||||    
T  8618416 ttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgatttgattccatctt 8618324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 3664954 - 3665002
Alignment:
Q  42 agggtgtcaatattacaagctcgtcaccaagtctttgatttgattccat 90  Q
    |||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  3664954 agggtgtcaaaattacacgctcgtcaccaagtctttgatttgtttccat 3665002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46342983 - 46343114
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    ||||||||||| || |||||| |||||||||||  || || ||| ||||||||||||| | | |||||||  |||||||||||||| ||||||  ||| |    
T  46342983 ttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgatttgatttcatcttgtattac 46343082  T
Q  101 aaattgtgtgatgaatgaaatgatatgagttt 132  Q
    |||   ||  ||||||||||| ||||||||||    
T  46343083 aaaccttgctatgaatgaaataatatgagttt 46343114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44585829 - 44585693
Alignment:
Q  1 ttgttaggagaaaaacgaatggtgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttaaattcc 100  Q
    |||| |||||| | ||||||| |||||||||||| || || |||||||  || ||||| | | |||||||||| |||||||| |||||||| |  ||| |    
T  44585829 ttgtcaggagacagacgaatgttgtcgctcatagcttagcaagggtgttgatgttacatgtttgtcaccaagtttttgatttaattccatcatgtattac 44585730  T
Q  101 aaattgtgtgatgaatgaaatgatatgagtttttgtt 137  Q
    ||||  || |||||||||||| ||| |||||| ||||    
T  44585729 aaatcttgcgatgaatgaaataatacgagtttatgtt 44585693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 4816748 - 4816819
Alignment:
Q  23 tgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatctta 94  Q
    |||||| ||||| || || |||| ||||| |||  | ||||||||||||||||||||||||||| |||||||    
T  4816748 tgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgatttcatctta 4816819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University