View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8707_low_3 (Length: 441)
Name: NF8707_low_3
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 39979897 - 39980306
Alignment:
| Q |
14 |
catatccattaggtagaatagttacaattgcatttactcctactgggcaatagattctgcaagcataggattggagctcaaagaaccgacgtggctagat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39979897 |
catatccattaggtagaatagttacaattgcatttactcctacagggcaatagattctgcaagcataggattggagctcaaagaaccgacgtggctagat |
39979996 |
T |
|
| Q |
114 |
ttagaggagtagaaatcttggacaattaagacagttgcaaagatgggaccgtatatatgaacagaagttttgtatagtcacgtgactttcgtttaagcag |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39979997 |
ttagaggagtagaaatcttggaaaattaagacagttgcaaagatgggaccgtatatatgaatagaagttttgtatagtcacgtgactttcgtttaagcag |
39980096 |
T |
|
| Q |
214 |
taaaatacaaaattgaagagtctatgggatgaaatgagacctaaactaaacatgagtttataacttaataatgcaattctcttctaataaattggctttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980097 |
taaaatacaaaattgaagagtctatgggatgaaatgagac-----ctaaacatgagtttataacttaataatgcaattctcttctaataaattggctttg |
39980191 |
T |
|
| Q |
314 |
ctgtggacaactttataaattgagacggttttcttgttataagttgaactcaaaattacgagttaggatcttctccatttataaaaataaataaatggag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39980192 |
ctgtggacaactttataaattgagacggttttcatgttataagttgaactcaaaattacgagttaggatcttctttatttataaaaataaataaatggag |
39980291 |
T |
|
| Q |
414 |
attgtcatttagaat |
428 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
39980292 |
attgtcaattagaat |
39980306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 45446559 - 45446611
Alignment:
| Q |
371 |
acgagttaggatcttctccatttataaaaataaataaatggagattgtcatttagaa |
427 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
45446559 |
acgagttaggatcctctccatttataa----aaataaatggagattgccatttagaa |
45446611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 39426095 - 39426062
Alignment:
| Q |
373 |
gagttaggatcttctccatttataaaaataaata |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
39426095 |
gagttaagatcttctccatttataaaaataaata |
39426062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 11452953 - 11452985
Alignment:
| Q |
373 |
gagttaggatcttctccatttataaaaataaat |
405 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
11452953 |
gagttaggatcctctccatttataaaaataaat |
11452985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 29916494 - 29916466
Alignment:
| Q |
380 |
gatcttctccatttataaaaataaataaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29916494 |
gatcttctccatttataaaaataaataaa |
29916466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University