View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8707_low_4 (Length: 414)
Name: NF8707_low_4
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_4 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0391 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 13071 - 12693
Alignment:
| Q |
19 |
atcacatataccaggaggaaatctcaccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttt |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13071 |
atcacatataccagtaggaaatctcaccatatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggacgctacccttt |
12972 |
T |
|
| Q |
119 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12971 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
12872 |
T |
|
| Q |
219 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12871 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctc |
12772 |
T |
|
| Q |
319 |
catcaacttgggaagtatatactgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggac |
397 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12771 |
catcaacttgggaagcatatactgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggac |
12693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 43 - 390
Target Start/End: Complemental strand, 33976084 - 33975737
Alignment:
| Q |
43 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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|
| T |
33976084 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33975985 |
T |
|
| Q |
143 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
242 |
Q |
| |
|
||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |||||| |||||||| | || | |
|
|
| T |
33975984 |
atgtacagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33975885 |
T |
|
| Q |
243 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagtatatactg |
342 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||| ||| | | ||||| |
|
|
| T |
33975884 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgcaatccactcgggtaatgagtactg |
33975785 |
T |
|
| Q |
343 |
cttggtatgaagatttaaaattaaaacctcggcctgagctggttgcat |
390 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
33975784 |
cttggtatgaatatttaaaatcagaacctcgacctgagctggttgcat |
33975737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 33960813 - 33960439
Alignment:
| Q |
19 |
atcacatataccaggaggaaatctcaccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttt |
118 |
Q |
| |
|
|||||| ||||||| |||||| ||||| || |||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||| |
|
|
| T |
33960813 |
atcacagataccagttggaaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttgcaaatgcatctgaaattaggatgctacccttt |
33960714 |
T |
|
| Q |
119 |
tcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtt |
218 |
Q |
| |
|
|| ||||||||| |||| ||||||||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |
|
|
| T |
33960713 |
tcaaaagccagtattgtgttacacatgtagagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattcttt |
33960614 |
T |
|
| Q |
219 |
tcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctc |
318 |
Q |
| |
|
|||||| |||||||| | || ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
33960613 |
ccaggttctgtaaagaaccgagaagctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgc |
33960514 |
T |
|
| Q |
319 |
catcaacttgggaagtatatactgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttg |
393 |
Q |
| |
|
||| ||| ||| | | |||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
33960513 |
aatccactcgggtaatgagtactgcttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatttg |
33960439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 43 - 393
Target Start/End: Complemental strand, 33953483 - 33953133
Alignment:
| Q |
43 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
|
|
| T |
33953483 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33953384 |
T |
|
| Q |
143 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
242 |
Q |
| |
|
||||| || ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||| | ||| |||| || |||||| |||||||| | || | |
|
|
| T |
33953383 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
33953284 |
T |
|
| Q |
243 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagtatatactg |
342 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||| ||| ||| | | ||||| |
|
|
| T |
33953283 |
gctcaatgttgttcagtttagaaggatggaaatcgtagtttgtgattatcagaactcttagtttactcatttttgcaatccactcgggtaatgagtactg |
33953184 |
T |
|
| Q |
343 |
cttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttg |
393 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||| |||||| |
|
|
| T |
33953183 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttg |
33953133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 43 - 393
Target Start/End: Complemental strand, 33993003 - 33992653
Alignment:
| Q |
43 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
142 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
|
|
| T |
33993003 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33992904 |
T |
|
| Q |
143 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
242 |
Q |
| |
|
||||| || ||||||||| ||||| |||||||||||||||||||||| || |||||||||| ||||| ||| || |||||| |||||||| | || | |
|
|
| T |
33992903 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaagggaccaaaattcgctctagtctgattttttccaggttctgtaaagaaccgagaa |
33992804 |
T |
|
| Q |
243 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagtatatactg |
342 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||| ||| |||| | || || |
|
|
| T |
33992803 |
gctcaaagttgttcagttcacatggatggaaactgtagtttgtgattataagaacttttagtttactcatttttttgatcgactcaggaaatgagtattg |
33992704 |
T |
|
| Q |
343 |
cttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttg |
393 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
33992703 |
cttggtatgcaaatttaaaatcaaaacctcgacctgagttggttgcatttg |
33992653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 397
Target Start/End: Complemental strand, 33914289 - 33913951
Alignment:
| Q |
59 |
taatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagtt |
158 |
Q |
| |
|
||||||||| |||| ||||||| || ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||| || |||| || |
|
|
| T |
33914289 |
taatcaatgctcaaatcttctaaattaggaaacaaatctgaaattaggatgctacccttttcaaaagctagtcttgtattacacatgtagagggataatt |
33914190 |
T |
|
| Q |
159 |
ttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcag |
258 |
Q |
| |
|
|| | ||| |||||| |||||| ||||||||||||||||| ||||| || || |||| |||||||||| ||||||| || ||||||||| || ||||| |
|
|
| T |
33914189 |
ttttgagattcttcattgtgccaaaggaaggaacagaaatccgctctagcctgattcttttcaggttggataaagagctaattagctcaaaattgttcag |
33914090 |
T |
|
| Q |
259 |
ttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagtatatactgcttggtatgaagattt |
358 |
Q |
| |
|
| ||||||| | ||||| | ||| ||| ||| ||| || ||||||| |||||||||||| |||| | |||||| | ||||| | ||| |||||| || |
|
|
| T |
33914089 |
tacagaagggcgtaaaccatgatttatgactataagagctcttagtttgctcattttctccttcaattctggaagtgtgtactgttcggtttgaagaatt |
33913990 |
T |
|
| Q |
359 |
aaaattaaaacctcggcctgagctggttgcatttgggac |
397 |
Q |
| |
|
||||| | |||||| | |||||||| |||| ||||||| |
|
|
| T |
33913989 |
aaaatcagaacctcaacatgagctggctgcacttgggac |
33913951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 53 - 397
Target Start/End: Complemental strand, 33943012 - 33942668
Alignment:
| Q |
53 |
ttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtg |
152 |
Q |
| |
|
||||| ||||| ||| |||| ||||||| || |||||| || |||||||||| ||| |||||||| ||||| |||||||||||||||||||| || | |
|
|
| T |
33943012 |
ttgcaataatccatgctcaaatcttctaaattaggaaataagtcggaaattaggatgctgcccttttcaaaagcgagtcttgtattacacatgtagaggg |
33942913 |
T |
|
| Q |
153 |
atagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagtt |
252 |
Q |
| |
|
||| |||| | ||| ||||||||||||| ||||||||||||||||| | ||| || || |||| ||| |||||| ||||||| ||||||||||| || |
|
|
| T |
33942912 |
ataattttttaagattcttcaatgtgccaaaggaaggaacagaaatcctctctagcctgattcttttaaggttggataaagagctaagtagctcaagatt |
33942813 |
T |
|
| Q |
253 |
attcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagtatatactgcttggtatga |
352 |
Q |
| |
|
|||||||||||||| | ||||| | ||| ||| ||| ||| |||| ||||| |||||||||||||||| | |||| | | ||||| ||||| ||| |
|
|
| T |
33942812 |
gttcagttcagaagggcgtaaaccatgatttatgactataagagctttaagtttgttcattttctccatcaattctggaaatgtgtactgtttggtttga |
33942713 |
T |
|
| Q |
353 |
agatttaaaattaaaacctcggcctgagctggttgcatttgggac |
397 |
Q |
| |
|
||||||||||| | |||||| || ||||||| |||| ||||||| |
|
|
| T |
33942712 |
agatttaaaatcagaacctcagcaagagctggctgcacttgggac |
33942668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 109 - 393
Target Start/End: Original strand, 8277342 - 8277619
Alignment:
| Q |
109 |
gctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagt |
208 |
Q |
| |
|
||||||| |||| |||| || |||||||||||||||||| | |||| |||||||||| ||||||||||| ||| ||| ||||| ||||| ||||| | | |
|
|
| T |
8277342 |
gctacccatttcaaaagtcattcttgtattacacatgtagacagataattttctcagattcttcaatgtgtcgagggatggaacggaaatccgctctaat |
8277441 |
T |
|
| Q |
209 |
ctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttac |
308 |
Q |
| |
|
|| | || ||| ||||| |||| ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8277442 |
ctgactctttttaggttctgtagaga-------agctcaatgttattcagtttagaaggatggaaactgtagtttgtgattatcagaacttttagtttac |
8277534 |
T |
|
| Q |
309 |
tcattttctccatcaacttgggaagtatatactgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttg |
393 |
Q |
| |
|
||||||| | ||| ||| || | | |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
8277535 |
tcatttttgcaatccactcggttaatgagtactgcttggtatgaagatttaaaattagaacctcggcctgagctgtttgtatttg |
8277619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 8275944 - 8276008
Alignment:
| Q |
43 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattagga |
107 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
8275944 |
caccaaatctttgcaggaatcaatgttcaattcttcaggatttggaaatgcatctgaaattagga |
8276008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 27910976 - 27911046
Alignment:
| Q |
256 |
cagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaact |
326 |
Q |
| |
|
||||||||||||||| ||||| || ||| | ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
27910976 |
cagttcagaaggatgcaaaccataatttcttattatgagaacttttagtttgctcattttctccatcaact |
27911046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 315
Target Start/End: Original strand, 6742793 - 6742977
Alignment:
| Q |
131 |
cttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgta |
230 |
Q |
| |
|
|||||||| ||||| | ||| | |||||||| |||| |||||||| ||| ||| |||| || |||| ||||| ||| ||| ||||||||| || |
|
|
| T |
6742793 |
cttgtattgcacatatgaagggttagttttcgcagattcttcaatttgcacaagcaagggactgaaaccttctccaatcttattattttcaggtttgata |
6742892 |
T |
|
| Q |
231 |
aagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
315 |
Q |
| |
|
|||| ||||||||||||| || | | ||||||| |||||||||| || ||||||| ||| | |||||| ||||| |||||||| |
|
|
| T |
6742893 |
aagaaccaagtagctcaaacttggtgaattcagaacgatggaaaccataatttgtgactattaaaactttcagtttgctcatttt |
6742977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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