View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8707_low_5 (Length: 389)
Name: NF8707_low_5
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 2630190 - 2630515
Alignment:
| Q |
14 |
agaacctattatacttaactatcttacaatttacattttctgatattgttatgatgtttatacgcgcataaatcagctagaatatctggttagagagaac |
113 |
Q |
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| T |
2630190 |
agaacctattatacttaactatcttacaatttacattttctgatattgttatgatgtttatacgcgcataaatcagctagaatatctggttagagagaac |
2630289 |
T |
|
| Q |
114 |
aatgggaccttatttataagaccttacttggtccgtatatcttaacccaaattaatagactccaacaattgctaccataaagaagatacatcagtaacca |
213 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630290 |
aatgggaccttatttataagaccgtccttggtccgtatatcttaacccaaattaatagactccaacaattgctaccataaagaagatacatcagtaacca |
2630389 |
T |
|
| Q |
214 |
agctgtatcacaccctatgtgggtcagacaatgtctttattccctatatgtattaagttcaaagattgatcatttaactcaaattttcttaactgtttgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2630390 |
agctgtatcacaccctatgtgggtcagacaatgtctttattccctatatgtattaagttcaaagattgatcatttaactcaaattttcttaacggtttgg |
2630489 |
T |
|
| Q |
314 |
cccgtagattttttctattcgcaaga |
339 |
Q |
| |
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||| ||||||||||||||| |||||| |
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| T |
2630490 |
cccatagattttttctattggcaaga |
2630515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 873932 - 873833
Alignment:
| Q |
14 |
agaacctattatacttaactatcttacaatttacattttctgatattgttatgatgtttatacgcgcataaatcagctagaatatctggttagagagaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
873932 |
agaacctattatacttaactatcttacaatttacatttgccgatattgttatgatgtttatacgctcataaatcagctagaatatctagttagagagaac |
873833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 12241315 - 12241184
Alignment:
| Q |
196 |
aagatacatcagtaaccaagctgtatcacaccctatgtgggtcagacaatgtctttattccctatatgtattaagttcaaagattgatcatttaactcaa |
295 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
12241315 |
aagatacagcagtaaccaagctgtatcacaccctatgtgggtcagacaatgtctttattccctgtatgtattaagctcaaagattgatcatttaactcaa |
12241216 |
T |
|
| Q |
296 |
attttcttaactgtttggcccgtagatttttt |
327 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
12241215 |
attttcttaatggtttggcccgtagatttttt |
12241184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 12241423 - 12241322
Alignment:
| Q |
55 |
gatattgttatgatgtttatacgcgcataaatcagctagaatatctggttagagagaacaatgggaccttatttataagaccttacttggtccgtatatc |
154 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
12241423 |
gatattgttatgatgtttatacgctcacaaatcagctagaatatctggttagagagaacaatgggaccttatttataagaccgtacttggtctgtatatc |
12241324 |
T |
|
| Q |
155 |
tt |
156 |
Q |
| |
|
|| |
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|
| T |
12241323 |
tt |
12241322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 274278 - 274377
Alignment:
| Q |
14 |
agaacctattatacttaactatcttacaatttacattttctgatattgttatgatgtttatacgcgcataaatcagctagaatatctggttagagagaac |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
274278 |
agaaactattatacttaactatcttacaatttacatttgccgatattgttatgatgtttatacgctcataaatcagctagaatatctagttagagagaac |
274377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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