View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8707_low_8 (Length: 269)
Name: NF8707_low_8
Description: NF8707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8707_low_8 |
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| [»] chr2 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 6409321 - 6409560
Alignment:
| Q |
30 |
ttattcttagctacttcaccatatacacatatactccatggatttcattttgtgtatattacagatatgtttctttgatagccattgtttatgttgctaa |
129 |
Q |
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| T |
6409321 |
ttattcttagctacttcaccatatacacatatactccatggatttcattttgtgtatattacagatatgtttctttgatagccattgtttatgttgctaa |
6409420 |
T |
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| Q |
130 |
atatgttgatatgacctattattaataaattagcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
6409421 |
atatgttgatatgacctattattaataaattagcttggacagttagaattatcaaatgtgaaaatagaactagattgtaaactagtggttgatagtatat |
6409520 |
T |
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| Q |
230 |
atgataagaataacaaccaggtggaatttggtagtatcat |
269 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
6409521 |
atgataagaataacaaccaggtagaatttggtagtatcat |
6409560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 28626611 - 28626504
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaaccaggtggaatttggt |
261 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
28626611 |
gcttggatagttagaattatcaaatgtgctaatagaactagattgtaaactagtggttgatagcatatatgataagaataactaccaggaagaatttggt |
28626512 |
T |
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| Q |
262 |
agtatcat |
269 |
Q |
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|||||||| |
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| T |
28626511 |
agtatcat |
28626504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 4318976 - 4318870
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaaccaggtggaatttggt |
261 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
4318976 |
gcttggacagttaaaattatcaaatgtgcaattagaactagattgtaaactagtg-ttgatagcatatatgataagaataacaaccaggcagaatttggt |
4318878 |
T |
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| Q |
262 |
agtatcat |
269 |
Q |
| |
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|||||||| |
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| T |
4318877 |
agtatcat |
4318870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 34212627 - 34212713
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaacca |
248 |
Q |
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|||||||||||| | ||||| ||||||| || |||||||||||||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
34212627 |
gcttggacagttgggattattggatgtgcacattgaactagattgtaagctagtggttgatagcatatgtgataagaataataacca |
34212713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 18977443 - 18977357
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaacca |
248 |
Q |
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|||||||||||| | ||||| ||||||| || ||||||||||||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
18977443 |
gcttggacagttgggattattggatgtgcacattaaactagattgtaagctagtggttgatagcatatgtgataagaataataacca |
18977357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 38176497 - 38176390
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaaccaggtggaatttggt |
261 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38176497 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggt |
38176398 |
T |
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| Q |
262 |
agtatcat |
269 |
Q |
| |
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|||||||| |
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| T |
38176397 |
agtatcat |
38176390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 1527124 - 1527231
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaaccaggtggaatttggt |
261 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
1527124 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatagcatatatgataagaataacaaccaggcagaatttggt |
1527223 |
T |
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| Q |
262 |
agtatcat |
269 |
Q |
| |
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|||||||| |
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| T |
1527224 |
agtatcat |
1527231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 8618574 - 8618488
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaacca |
248 |
Q |
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|||||||||||| | ||||||| ||||||| || |||||||||||||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
8618574 |
gcttggacagttgggattatcagatgtgcacatcgaactagattgtaagctagtggttgatagcatatgtgataagaataataacca |
8618488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 44585987 - 44585901
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaacca |
248 |
Q |
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|||| ||||||| | ||||||| ||||||| || ||||||||||||||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
44585987 |
gctttgacagttgggattatcatatgtgcacattgaactagattgtaaactagtggttgatagcatatgtgataagaataataacca |
44585901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 46342825 - 46342911
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaacca |
248 |
Q |
| |
|
||||||||| |||| ||||| | ||||||| || ||||||||||||||| |||||||||||| |||| |||||||||||| ||||| |
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| T |
46342825 |
gcttggacaattaggattattagatgtgcacattgaactagattgtaaacaagtggttgatagcatatgtgataagaataataacca |
46342911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 5299318 - 5299354
Alignment:
| Q |
185 |
atgtgcaaatagaactagattgtaaatcagtggttga |
221 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
5299318 |
atgtgcacatagaactagattgtaaattagtggttga |
5299354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 22497900 - 22497793
Alignment:
| Q |
162 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagtatatatgataagaataacaaccaggtggaatttggt |
261 |
Q |
| |
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||||||| |||| | |||||| ||||||| || |||||||||||||| |||||||||||| |||| |||||||||||| ||||| | |||||||| |
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| T |
22497900 |
gcttggagagttgggattatcggatgtgcacattgaactagattgtaagatagtggttgatagcatatgtgataagaataataaccaagccgaatttggc |
22497801 |
T |
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| Q |
262 |
agtatcat |
269 |
Q |
| |
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| |||||| |
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|
| T |
22497800 |
aatatcat |
22497793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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