View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8708_high_2 (Length: 274)
Name: NF8708_high_2
Description: NF8708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8708_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 18603463 - 18603688
Alignment:
| Q |
26 |
cgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtactatacacatggatc |
125 |
Q |
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| T |
18603463 |
cgtacaatcatcggcccgaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacaggagtaccatacacacggatc |
18603562 |
T |
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| Q |
126 |
catgctccctgttcataccatgcatcttttgatgaccatttatgcaaatcagagaataacatactaaagaagtcgatagcatatcgaccttgccggaaca |
225 |
Q |
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| T |
18603563 |
catgctccctgttcataccatgcatcttttgatgaccatttatgcaaataagagaataacatactaaagaagtcgatagcatatcgaccttgctggaaca |
18603662 |
T |
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| Q |
226 |
atgaagaaacattttatcaccaccaa |
251 |
Q |
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| T |
18603663 |
atgaagaaacattttatcaccaccaa |
18603688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 5961017 - 5961123
Alignment:
| Q |
21 |
tccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtactatacacat |
120 |
Q |
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| T |
5961017 |
tccaccgtacaattgtcgacccaaataaatctgctacattctgaaacacataatttgaaaaacgattcgttccatgcatgaatgggagtaccatacacaa |
5961116 |
T |
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| Q |
121 |
ggatcca |
127 |
Q |
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| T |
5961117 |
ggatcca |
5961123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 19661684 - 19661776
Alignment:
| Q |
19 |
tgtccaccgtacaatcatcggcccaaatgaatcttccatacttcgaaacacataatatgaaaaacaattcattccatgcatgaacgggagtac |
111 |
Q |
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| T |
19661684 |
tgtccaccgtacaatcatccgaacggatatatcttccacaccccgaaacacaaattttgaaaaacaattcattccatgcatgcacaggagtac |
19661776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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