View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8708_low_1 (Length: 311)
Name: NF8708_low_1
Description: NF8708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8708_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 42850471 - 42850183
Alignment:
| Q |
15 |
atactcacaagtagaagcgacacacaatggttgattcacagattcgcataacaacttgtcgatgtttgtgctagtcttgtggaattatatgtgtttggtg |
114 |
Q |
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| T |
42850471 |
atactcacaagtagaagcgacacacaatggttgattcacagattcgcataacaacttgtcgatgtttgtgctagtcttgtggaattatatgtgtttggtg |
42850372 |
T |
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| Q |
115 |
ttatttgtttgtgataggtttttt-gacaatgggttcagtcttcttgtgagagggcttattataaatagtgattcttatgtcatgtgtgatcactaattc |
213 |
Q |
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| T |
42850371 |
ttatttgtttgtgataggtttttttgacaatgggttcagtcttcttgtgaaagggcttattataaatagtgattcttatgtcatgtgtgatcactaattc |
42850272 |
T |
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| Q |
214 |
atggtagtaatccaattgaagtgctattagtgttccaattttccccccttttttgctctttgtattgttatctctttgagtgatgatgt |
302 |
Q |
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| T |
42850271 |
atggtagtaatccaattgaagtgctattagtgttccaattttcccccctgttttgctctttgtattgttatctctttgagcgatgatgt |
42850183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 30941513 - 30941734
Alignment:
| Q |
76 |
atgtttgtgctagtcttgtggaattatatgtgtttggtgttatttgtttgtgataggttttttgacaatgggttcagtcttcttgtgagagggcttatta |
175 |
Q |
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| T |
30941513 |
atgtttttgctagtctggcggaattataggtgtttggtgttattggtttgtgataggtttt--gacattgggttcagtcttcctgtgaaaggacatttta |
30941610 |
T |
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| Q |
176 |
taaatagtgattctt-atgtcatgtgtgatcactaattcatggtagtaatccaattgaagtgctattagtgttccaattttccccccttttttgctcttt |
274 |
Q |
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| T |
30941611 |
caaatagtgactctttatgtcatgagtgatcactacttcgtggtattaatccaattgcagtgctattggtgttccaaattt-tccccttttttgctattt |
30941709 |
T |
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| Q |
275 |
gtattgttatctctttgagtgatga |
299 |
Q |
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|||| ||||||||||||| |||||| |
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| T |
30941710 |
gtatggttatctctttgactgatga |
30941734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 30941124 - 30941156
Alignment:
| Q |
15 |
atactcacaagtagaagcgacacacaatggttg |
47 |
Q |
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| T |
30941124 |
atactcacaagtagaagcgacatacaatggttg |
30941156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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