View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8708_low_5 (Length: 240)

Name: NF8708_low_5
Description: NF8708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8708_low_5
NF8708_low_5
[»] chr5 (1 HSPs)
chr5 (181-223)||(25663251-25663293)
[»] chr2 (1 HSPs)
chr2 (184-221)||(38724013-38724050)
[»] chr4 (3 HSPs)
chr4 (181-227)||(28977308-28977354)
chr4 (184-221)||(9657461-9657498)
chr4 (184-221)||(12917898-12917935)
[»] chr7 (3 HSPs)
chr7 (184-221)||(38766173-38766210)
chr7 (184-220)||(28517509-28517545)
chr7 (184-212)||(41891707-41891735)
[»] chr1 (1 HSPs)
chr1 (184-221)||(5453944-5453981)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 25663293 - 25663251
Alignment:
Q  181 ttttttactatcaatattacttacacataaataagaggcaaac 223  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  25663293 ttttttactatcaatattacttacacataaaaaggaggcaaac 25663251  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 38724050 - 38724013
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggcaa 221  Q
    |||||||||||||||||||||||||||||| |||||||    
T  38724050 tttactatcaatattacttacacataaataggaggcaa 38724013  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 28977354 - 28977308
Alignment:
Q  181 ttttttactatcaatattacttacacataaataagaggcaaactgat 227  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||    
T  28977354 ttttttactatcaatattaattacgcatgaataggaggcaaactgat 28977308  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 9657498 - 9657461
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggcaa 221  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  9657498 tttactatcaatattacttacacatgaataagaagcaa 9657461  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 12917898 - 12917935
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggcaa 221  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  12917898 tttactatcaatattacttactcatgaataagaggcaa 12917935  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 38766173 - 38766210
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggcaa 221  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  38766173 tttactatcaatattacttacacatgaataggaggcaa 38766210  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 28517545 - 28517509
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggca 220  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  28517545 tttactatcaatattacttacacatgaataggaggca 28517509  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 41891735 - 41891707
Alignment:
Q  184 tttactatcaatattacttacacataaat 212  Q
    |||||||||||||||||||||||||||||    
T  41891735 tttactatcaatattacttacacataaat 41891707  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 5453944 - 5453981
Alignment:
Q  184 tttactatcaatattacttacacataaataagaggcaa 221  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  5453944 tttactatcaatattacttacacatgaataggaggcaa 5453981  T

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