View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8709_high_12 (Length: 236)
Name: NF8709_high_12
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 5590394 - 5590600
Alignment:
| Q |
14 |
cagagatcaaaccggccagatattcagacgaaaaaatcgaccagatatctagaggaaaaaaccacattcaaaccggagataatgtcaatttaaggttcaa |
113 |
Q |
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| T |
5590394 |
cagacatcaaaccggccagatattcagacgaaaaaatcgaccaaatatctagatgaaaaaaccacaatcaaactggagataatgtcaatttaaggttcaa |
5590493 |
T |
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| Q |
114 |
tgtctggttcgattttcaaatcattgaatatgttttaaaaaccaaaccaaacatcaaaccggcgagatatccagatcatagttcaacaactttaaatcac |
213 |
Q |
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| T |
5590494 |
tgtctggttcggttttcaaatcattgaatatgttttaaaaacgaaaccagacatcaaaccggcgagatatccagatcatagttcaacaactttaaatcac |
5590593 |
T |
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| Q |
214 |
tcgaact |
220 |
Q |
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|| |||| |
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| T |
5590594 |
tcaaact |
5590600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 975202 - 975322
Alignment:
| Q |
14 |
cagagatcaaaccggccagatattcagacgaaaa-aatcgaccagatatctagaggaaaaaaccacattcaaaccggagataatgtcaatttaaggttca |
112 |
Q |
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|||| ||| |||| ||||||||| |||||||||| ||||||||||||| | ||||||| |||||||| | ||| | ||||||||||| |||| |||||| |
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| T |
975202 |
cagacatctaaccagccagatatccagacgaaaaaaatcgaccagataaccagaggaagaaaccacagttaaatcatagataatgtcagtttatggttca |
975301 |
T |
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| Q |
113 |
atgtctggttcgattttcaaa |
133 |
Q |
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| T |
975302 |
acgtctgatttggttttcaaa |
975322 |
T |
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