View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8709_high_8 (Length: 250)

Name: NF8709_high_8
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8709_high_8
NF8709_high_8
[»] chr8 (2 HSPs)
chr8 (1-238)||(11402942-11403180)
chr8 (56-126)||(11402306-11402376)
[»] chr4 (3 HSPs)
chr4 (44-238)||(45966023-45966217)
chr4 (44-238)||(27730305-27730499)
chr4 (60-119)||(24146874-24146933)
[»] chr6 (1 HSPs)
chr6 (44-238)||(29303756-29303950)
[»] chr2 (2 HSPs)
chr2 (44-238)||(42913205-42913399)
chr2 (44-222)||(42300625-42300803)
[»] chr1 (1 HSPs)
chr1 (44-238)||(29282346-29282540)
[»] chr5 (3 HSPs)
chr5 (44-238)||(12529092-12529286)
chr5 (44-238)||(35841736-35841930)
chr5 (189-238)||(12643728-12643777)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11402942 - 11403180
Alignment:
Q  1 cattgttgaaattatcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402942 cattgttgaaattatcacgacctttactctctcccttctaaccggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttacttt 11403041  T
Q  101 ttcagtcttctccaatattttgttga-atgactttcgatacatcctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagt 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11403042 ttcagtcttctccaatattttgttgacatgactttcgatacatcctttgcgactctgctaataacaagatattgatattggaggactccattatcgtagt 11403141  T
Q  200 caccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11403142 caccacatgaccaaactttatcgacatagtgtgtagaat 11403180  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 11402376 - 11402306
Alignment:
Q  56 gttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga 126  Q
    |||||||| |||||| || ||||||| ||||||||||||| |||| || ||||||| ||||||| ||||||    
T  11402376 gttattgaagttcacttgacttttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttga 11402306  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 45966217 - 45966023
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| || | |    
T  45966217 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgctt 45966118  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| |||||||||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  45966117 cc-ctgcaactctgctaccgacaaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 45966023  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 27730305 - 27730499
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||  ||||| ||| ||||| || | |    
T  27730305 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttttccaatattcggttgacatggctttcaatgctt 27730404  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||  |||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  27730405 cc-ctgcaactctgctaccgacaaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 27730499  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 24146933 - 24146874
Alignment:
Q  60 ttgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatatt 119  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  24146933 ttgagcttcacctggctcttcaaggcttcctcctttactttttcagtcttatccaatatt 24146874  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 29303950 - 29303756
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| || | |    
T  29303950 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgctt 29303851  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||| |||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  29303850 cc-ctgcaactctgctaccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 29303756  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 42913205 - 42913399
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| || | |    
T  42913205 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgctt 42913304  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||| |||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  42913305 cc-ctgcaactctgctaccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 42913399  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 42300803 - 42300625
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||| ||| ||| ||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| ||||| || | |    
T  42300803 ggattcaacaatgttgttgaggttcacctggctcttcaaggcttcctcctttacattttcactcttctccaatattctgttgacatggctttcaatgctt 42300704  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcg 222  Q
    ||  |||||||||||||   ||||| ||||| ||| |  |||||||| ||||||||||||||||||| || | |||||||    
T  42300703 cc-ctgcaactctgctaccgacaaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcg 42300625  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 29282346 - 29282540
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| || | |    
T  29282346 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgctt 29282445  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||| |||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  29282446 cc-ctgcaactctgctaccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 29282540  T

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Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 12529092 - 12529286
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||  ||||| ||| ||||| || | |    
T  12529092 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtattctccaatattcggttgacatggctttcaatgctt 12529191  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||| |||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||    
T  12529192 cc-ctgcaactctgctaccgacaaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaat 12529286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 35841930 - 35841736
Alignment:
Q  44 ggattcagcaacgttattgaggttcacctggcttttcatggcttcctcctttactttttcagtcttctccaatattttgttga-atgactttcgatacat 142  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||| || | |    
T  35841930 ggattcagcaacgttgttgaggttcacctggctcttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgctt 35841831  T
Q  143 cctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||  |||||||||||||   ||||| ||||  |||    |||||||| |||| |||||||||||||| || | ||||||| ||| ||| |||||||    
T  35841830 cc-ctgcaactctgctaccgacaaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaat 35841736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 12643777 - 12643728
Alignment:
Q  189 attatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaat 238  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||    
T  12643777 attattgtagtcaccacatgatcaaacttcatcggcatagtgtgtagaat 12643728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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