View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8709_high_9 (Length: 242)
Name: NF8709_high_9
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8709_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28281585 - 28281363
Alignment:
| Q |
1 |
atggacaagattctttaaagaatgatcacaatatcaaaataaccaatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281585 |
atggacaagattctttaaagaatgatcacaatatcaaaataaccaatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattg |
28281486 |
T |
|
| Q |
101 |
ccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaagtggatggaaattggattcctcgaggaaccgagagtgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
28281485 |
ccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaagtggatggaaattggactcctcgaggaaccgagaatgata |
28281386 |
T |
|
| Q |
201 |
gccccattgcttgaccaggtcca |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28281385 |
gccccattgcttgaccaggtcca |
28281363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 28289632 - 28289470
Alignment:
| Q |
62 |
taatgaatggttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaag |
161 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| ||| | ||| |||| ||| ||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
28289632 |
taatcaatggttacctgcaaagcccatttttcaagattgccgtgagatggaatggaacaaccaatatctttcttaagctccttaaatacattcttcaaaa |
28289533 |
T |
|
| Q |
162 |
tggatggaaattggattcctcgaggaaccgagagtgatagccccattgcttgaccaggtccat |
224 |
Q |
| |
|
||||||||| || | ||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28289532 |
tggatggaactttaactccctccggaaccgaatatgaaagccccattgcttgaccaggtccat |
28289470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 28300684 - 28300529
Alignment:
| Q |
72 |
ttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaagtggatggaaa |
171 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||| | |||| |||| || | ||||| |||||||| || ||| |||| | ||||||| |
|
|
| T |
28300684 |
ttacctgcacagcccatttttcaagattaccatgagacggaatcgaacaaccaaggtcttgcttaagctccttaaatatattaaccaaactagatggaac |
28300585 |
T |
|
| Q |
172 |
ttggattcctcgaggaaccgagagtgatagccccattgcttgaccaggtccatgat |
227 |
Q |
| |
|
|| || |||| ||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
28300584 |
tttgactccttcaggaaccgagaatgaaagccccattgcttgaccaggtccatgat |
28300529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 24729632 - 24729563
Alignment:
| Q |
154 |
cttcaaagtggatggaaattggattcctcgaggaaccgagagtgatagccccattgcttgaccaggtcca |
223 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
24729632 |
cttcaaaatggatggaaatctgactcctcaaggaaccgagaatgatagccccattgcttcaccaggtcca |
24729563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University