View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8709_low_1 (Length: 862)

Name: NF8709_low_1
Description: NF8709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8709_low_1
NF8709_low_1
[»] chr8 (6 HSPs)
chr8 (19-844)||(34866623-34867448)
chr8 (19-205)||(34389579-34389765)
chr8 (14-157)||(10551685-10551828)
chr8 (28-138)||(9519017-9519127)
chr8 (778-844)||(34874782-34874847)
chr8 (51-156)||(37987529-37987634)
[»] chr1 (5 HSPs)
chr1 (19-200)||(41919796-41919977)
chr1 (19-188)||(24685075-24685243)
chr1 (30-133)||(17032835-17032939)
chr1 (14-175)||(4651145-4651304)
chr1 (14-103)||(31586262-31586351)
[»] chr7 (6 HSPs)
chr7 (19-200)||(38305574-38305755)
chr7 (25-159)||(3420231-3420365)
chr7 (30-134)||(47326447-47326551)
chr7 (34-175)||(38484915-38485055)
chr7 (34-133)||(37792712-37792811)
chr7 (34-90)||(12480298-12480355)
[»] chr4 (7 HSPs)
chr4 (19-200)||(30963777-30963958)
chr4 (19-132)||(16501154-16501267)
chr4 (28-135)||(31051226-31051333)
chr4 (56-175)||(35799957-35800076)
chr4 (36-90)||(46699512-46699566)
chr4 (39-77)||(4305075-4305113)
chr4 (51-104)||(38929125-38929178)
[»] chr3 (4 HSPs)
chr3 (16-188)||(19175830-19176001)
chr3 (14-135)||(1653477-1653598)
chr3 (30-175)||(20611145-20611289)
chr3 (30-111)||(17501810-17501891)
[»] chr6 (3 HSPs)
chr6 (19-210)||(16510854-16511045)
chr6 (34-115)||(12793536-12793617)
chr6 (215-250)||(16511068-16511103)
[»] chr2 (6 HSPs)
chr2 (30-198)||(39339408-39339574)
chr2 (24-113)||(31902955-31903044)
chr2 (49-109)||(2062247-2062307)
chr2 (34-103)||(22886068-22886137)
chr2 (28-135)||(27739128-27739235)
chr2 (34-99)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (36-135)||(27712379-27712478)
chr5 (51-156)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 750; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 19 - 844
Target Start/End: Original strand, 34866623 - 34867448
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |    
T  34866623 cacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacccaggtcataaaaaggcggtc 34866722  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacctactcaca 218  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34866723 gcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatttgaacaacactacccgcaacctactcaca 34866822  T
Q  219 tcaccaccaccacacaacctaaactaccacccaaaagctcaccccaaagcaccgcaatccaacccatgaaccactcttaaaatccattaaaagctgaacc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34866823 tcaccaccaccacacaacctaaactaccacccaaaagctcaccccaaagcaccgcaatccaatccatgaaccactcttaaaatccattaaaagctgaacc 34866922  T
Q  319 accacaattatccgacaaaccaaatctgacaaactagttccaaggaactctagacaccagatttgttttttcgttgacctccagaagcttcttgaaacac 418  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34866923 accacaattatccgacaaaccaaatctgactaactagttccaaggaactctagacaccagatctgttttttcgttgacctccagaagcttcttgaaacac 34867022  T
Q  419 ataaggcatttccatggcagctggttagcatgcacaatgccacttaagcaacaattttgaagagtgatgactataatgactcacaataaaaatactacaa 518  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867023 ataaggcatttccatggcagccggttagcatgcataatgccacttaagcaacaattttgaagagtgatgactataatgactcacaataaaaatactacaa 34867122  T
Q  519 gcaaagagtcctcacggcttcaaaaatattatcacagaagtggataaacatgccatatcttaacccataaaattcaaaatgaaaattaatggagttttgt 618  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867123 gcaaagagtcctcacggcttcaaaaatatcatcacagaagtggataaccatgccatatcttaacccataaaattcaaaatgaaaattaatggagttttgt 34867222  T
Q  619 gtaataagccacgtaaagaaagagatagaagataatctcaaagagaaaccatgccatatctttctcagcagctaccaaagattcggatctagatccgaac 718  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867223 gtaacaagccacgtaaagaaagagatagaagataatctcaaagagaaaccatgccatatctttctcagcagctaccaaagattcggatctagatccgaac 34867322  T
Q  719 ccaactaccaagtccggatctaaatctactaccacaaaccaccatgagccaccaccagtttgttctccccttaacaatctcaaaatcttctccatatctt 818  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34867323 ccaactaccaagtccggatctaaatctactaccacaaaccaccatgagccaccaccagtttgttctacccttaacaatctcaaaatcttctccatatctt 34867422  T
Q  819 tttagccagtttcctatctccattcc 844  Q
    |||||||||||||| |||||||||||    
T  34867423 tttagccagtttcccatctccattcc 34867448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 34389579 - 34389765
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| |||||||||||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| | || |||||     
T  34389579 cacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggct 34389678  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccg 205  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| ||||    
T  34389679 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctgaataacacttcccg 34389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 10551828 - 10551685
Alignment:
Q  14 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 113  Q
    |||| |||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10551828 agcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaagg 10551729  T
Q  114 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaa 157  Q
    | | || | |||||||||||||  | || ||||||| |||||||    
T  10551728 ctgtcgtcggtgacaaggagaagacatttgtcaccggagtaaaa 10551685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 9519127 - 9519017
Alignment:
Q  28 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 127  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||| | ||||||||| ||  ||| || |  ||| ||| ||||    
T  9519127 aaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgac 9519028  T
Q  128 aaggagaatgc 138  Q
    |||||||||||    
T  9519027 aaggagaatgc 9519017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 778 - 844
Target Start/End: Original strand, 34874782 - 34874847
Alignment:
Q  778 ttgttctccccttaacaatctcaaaatcttctccatatctttttagccagtttcctatctccattcc 844  Q
    ||||||| |||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  34874782 ttgttctgcccttaactatctcaaaatcttccccatatc-tttcagctagtttcctatctccattcc 34874847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 37987529 - 37987634
Alignment:
Q  51 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 150  Q
    ||||||| |||||||| |||||||||| | |||||||||| | ||||| ||||| |||| | ||  ||||| ||||||||||||| |||| || |||||     
T  37987529 aacaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccga 37987628  T
Q  151 agtaaa 156  Q
    ||||||    
T  37987629 agtaaa 37987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 9e-60; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 41919977 - 41919796
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||| | |||||| | |||||||||||||||||||||||||||| ||| ||||||     
T  41919977 cacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatcattaaatggcggca 41919878  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 200  Q
    |||||||||||||||||||  |||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41919877 gcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctgaacaacact 41919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 24685075 - 24685243
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| ||||||||||| ||  |||| |||| ||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||  ||||    
T  24685075 cacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaaccacaacccatatcataaaaagctggcc 24685174  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 188  Q
    |||||||||||||||||||  |||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24685175 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggat 24685243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 17032939 - 17032835
Alignment:
Q  30 atctagaggaagacgaaatccaacaac-aaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgaca 128  Q
    ||||||||||||||||||||||||||| ||||||| || || ||| ||| | |||||| ||| |||||||| ||||| ||||| | ||||||| ||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgaca 17032840  T
Q  129 aggag 133  Q
    |||||    
T  17032839 aggag 17032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 4651304 - 4651145
Alignment:
Q  14 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 113  Q
    |||| |||| ||||| |||  ||||||||||||| | |||||||||||||  | |||||| ||| ||||||||||||  ||||| | |||  ||||||||    
T  4651304 agcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa--acaactccgattgtaaaaagg 4651207  T
Q  114 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 175  Q
    | |||| | |||| ||||||||  | |  ||| ||| |||||||||||||||||||||||||    
T  4651206 cagccgtcagtgataaggagaagacatctgtcgccggagtaaaagagaatcaatggtggagc 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 31586262 - 31586351
Alignment:
Q  14 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 103  Q
    |||| ||| |||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||| | |||||||| | ||| ||||||||    
T  31586262 agcaacactgacacaaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 38305755 - 38305574
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |||||  ||||||||||    
T  38305755 cacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacccatatcatttaaaggcggcc 38305656  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 200  Q
    | ||||||||| |||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  38305655 gactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatgaacagcact 38305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 3420231 - 3420365
Alignment:
Q  25 cataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgt 124  Q
    ||||||| ||||||||||||||| | |||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||||||||||| | |||||    
T  3420231 cataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaaggcggtctcctgt 3420330  T
Q  125 gacaaggagaatgctttcgtcaccgtagtaaaaga 159  Q
     ||| ||||||||| |||||| |||||||||||||    
T  3420331 aacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 47326447 - 47326551
Alignment:
Q  30 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 129  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  47326447 atctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaa 47326546  T
Q  130 ggaga 134  Q
    |||||    
T  47326547 ggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 38485055 - 38484915
Alignment:
Q  34 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 133  Q
    |||||||||||||| |  ||||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T
Q  134 aatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 175  Q
    ||  | |  ||| ||| ||||||| |||| ||||||||||||    
T  38484956 aagacatctgtcgccggagtaaaatagaaacaatggtggagc 38484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 37792811 - 37792712
Alignment:
Q  34 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 133  Q
    |||| |||| |||| |||||| ||||||||||  | |||||||| |||||||||||| ||||||||| ||| |||||||||   |||| |||||||||||    
T  37792811 agagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 12480355 - 12480298
Alignment:
Q  34 agaggaagac-gaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 90  Q
    |||||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||    
T  12480355 agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 30963958 - 30963777
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||  || |    
T  30963958 cacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacccagatcataaaaagatggtc 30963859  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 200  Q
    |||||||||||||||||||| ||||||   |||||||||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  30963858 gcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctgaacagcact 30963777  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 16501267 - 16501154
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| ||| |||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||| ||| || |||| |||||    
T  16501267 cacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggcc 16501168  T
Q  119 gcctgtgacaagga 132  Q
    ||| ||||||||||    
T  16501167 gccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 31051226 - 31051333
Alignment:
Q  28 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 127  Q
    ||||||| ||||||| | || |||||||||||||||||| |||||||||| | |||||||||  ||||||||| ||| ||||||||||||| ||  | ||    
T  31051226 aaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaaggcggccaccgataac 31051325  T
Q  128 aaggagaa 135  Q
    ||||||||    
T  31051326 aaggagaa 31051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 35800076 - 35799957
Alignment:
Q  56 caaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaa 155  Q
    ||||||||||| | ||||||||||||||| ||||| || |||||| | | ||||||||||| || | || |||||||||| || | |||||||| ||||     
T  35800076 caaaacacgggcaacgacgccgatttgaaacggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtac 35799977  T
Q  156 aagagaatcaatggtggagc 175  Q
    ||||||| ||||||||||||    
T  35799976 aagagaaccaatggtggagc 35799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 46699512 - 46699566
Alignment:
Q  36 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 90  Q
    ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  46699512 aggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 4305113 - 4305075
Alignment:
Q  39 aagacgaaatccaacaacaaaacacgggaagcgacgccg 77  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  4305113 aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 38929178 - 38929125
Alignment:
Q  51 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatc 104  Q
    |||||||||||||||| || ||||||| | |||||||||| ||||||| |||||    
T  38929178 aacaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctagatc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 19176001 - 19175830
Alignment:
Q  16 cagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 115  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||||||||     
T  19176001 cagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaaccacaacccatatcataaaaaggca 19175902  T
Q  116 gccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 188  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19175901 gccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaacggcggat 19175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 1653477 - 1653598
Alignment:
Q  14 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 113  Q
    |||| |||| |||||||| | |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||  |||||||||||| ||| ||||    
T  1653477 agcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaagg 1653576  T
Q  114 cggccgcctgtgacaaggagaa 135  Q
      |||||| |||||||||||||    
T  1653577 ttgccgccagtgacaaggagaa 1653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 20611289 - 20611145
Alignment:
Q  30 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 129  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| |||||||||||||  ||||||    
T  20611289 atctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaa 20611190  T
Q  130 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 175  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||    
T  20611189 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 17501810 - 17501891
Alignment:
Q  30 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaa 111  Q
    |||||||||||||||||||| |||||||||||||||  |  |||| |  |||||||||||| ||||||| ||||| ||||||    
T  17501810 atctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 16510854 - 16511045
Alignment:
Q  19 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 118  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||||| | |    
T  16510854 cacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaaggcagtc 16510953  T
Q  119 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacc 210  Q
    || ||||||||||||||||  ||| || |||||||||||||||| ||||||||||||||||||||||| | |||||| |||| |||| ||||    
T  16510954 gcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctgaacagcacttcccggaacc 16511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 12793617 - 12793536
Alignment:
Q  34 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 115  Q
    |||||||||||||||||| || ||||||||||| | |||||||  ||||||||| || ||||||||| ||| ||||||||||    
T  12793617 agaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaacccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 16511068 - 16511103
Alignment:
Q  215 cacatcaccaccaccacacaacctaaactaccaccc 250  Q
    ||||||||||||||||||||||||||||| ||||||    
T  16511068 cacatcaccaccaccacacaacctaaactgccaccc 16511103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 39339408 - 39339574
Alignment:
Q  30 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 129  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  39339408 atctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaa 39339507  T
Q  130 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaaca 198  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||   |||||||||| |||||||||    
T  39339508 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc-gtaacggcggatctgaacaaca 39339574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 31902955 - 31903044
Alignment:
Q  24 acataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 113  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  31902955 acatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 2062307 - 2062247
Alignment:
Q  49 ccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaa 109  Q
    |||||||||||||||||| |||||||||| | |||||||||| ||||||||||||| ||||    
T  2062307 ccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacacaacccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 22886068 - 22886137
Alignment:
Q  34 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 103  Q
    ||||||||| |||| |||||||||||||||||  |||||||||  | |||||||||| || |||||||||    
T  22886068 agaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaaacccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 27739235 - 27739128
Alignment:
Q  28 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 127  Q
    ||||| ||||||||| |||| | ||||||||||||| || ||||||| ||   |||||||||| |||||| ||||||  ||||||| |||| |  |||||    
T  27739235 aaatcaagaggaagatgaaaccaaacaacaaaacacaggcagcgacgtcgccctgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgac 27739136  T
Q  128 aaggagaa 135  Q
    ||| ||||    
T  27739135 aagaagaa 27739128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 29486463 - 29486398
Alignment:
Q  34 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 99  Q
    ||||| |||||||| | |||||||||||  ||| |||||||||| | |||||||||| ||||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 27712478 - 27712379
Alignment:
Q  36 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaa 135  Q
    ||||||| |||| |||||||||||||||||| | |||||||| | |||||  ||| ||||| | ||||| |||| ||||  || || |||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaa 27712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 697769 - 697664
Alignment:
Q  51 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 150  Q
    |||||||  ||||||| |||||||||| | |||||||||| | ||||| ||||| |||| ||||    ||| ||||||||||||| |||| || |||||     
T  697769 aacaacagcacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccga 697670  T
Q  151 agtaaa 156  Q
    ||||||    
T  697669 agtaaa 697664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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